Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_O10
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    30   0.32 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.55 
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   6.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   9.0  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -3

Query: 347 GCRRAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           G  R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 96  GRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 19/71 (26%), Positives = 21/71 (29%)
 Frame = +3

Query: 519 PXPGXLXXXXPXTLPXXXPSXXPPRXPTVNXXPXPXXXRTPXPXYLPXTXPPQXVRASXX 698
           P P  L    P +LP   P   P   P     P       P P  +P   PP    A   
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP-AAPPLPPAAPAP 476

Query: 699 PXRXXPLXTXP 731
           P    P    P
Sbjct: 477 PPAPAPAPAAP 487


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 329 PPPLRSLISNLSNTCDLTPLPEW 261
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/69 (24%), Positives = 20/69 (28%)
 Frame = +2

Query: 557 PPRXXSXXXPPTXTHSQXXPXPXFXADSXSXLSPXDPSPXEXPRLXXARPGASXPXXXPL 736
           PP   S   PPT    +    P   A +    S   P P   P           P   P 
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 737 RXLSXPPXP 763
              + PP P
Sbjct: 190 LPSAVPPMP 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,298
Number of Sequences: 5004
Number of extensions: 16197
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)