Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_O10
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    31   0.90 
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.4  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 27/116 (23%), Positives = 30/116 (25%), Gaps = 5/116 (4%)
 Frame = +2

Query: 425 PXTDPTXLXXPHPXXXPXXXXKXXXXXAXXHPXPGXSTRRXPXXPP-----RXXSXXXPP 589
           P   P  L  PHP   P              P  G      P  PP        S   PP
Sbjct: 82  PPAHPHHLQHPHPYAYPGYPVPGQEGHQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPP 141

Query: 590 TXTHSQXXPXPXFXADSXSXLSPXDPSPXEXPRLXXARPGASXPXXXPLRXLSXPP 757
                   P P         ++P  PSP   P      P    P   P   +  PP
Sbjct: 142 PPPRVPRTPPPRSPPPRRPPMTP--PSPQRRPPRTPPSPEPRNPPRTPPSPIPPPP 195


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 28/113 (24%), Positives = 32/113 (28%)
 Frame = +2

Query: 425 PXTDPTXLXXPHPXXXPXXXXKXXXXXAXXHPXPGXSTRRXPXXPPRXXSXXXPPTXTHS 604
           P  DP     P     P              P P  S+   P  P    S   PP+    
Sbjct: 156 PSEDPQPSVEPSEDPQPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSPGPV 215

Query: 605 QXXPXPXFXADSXSXLSPXDPSPXEXPRLXXARPGASXPXXXPLRXLSXPPXP 763
                P   ++  S   P DPS    P      PG   P   P R    PP P
Sbjct: 216 DPSEDPK-PSEPPSP-GPVDPSDEPSP---SDPPGPPGPPGPPTRRPPGPPGP 263


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/51 (27%), Positives = 16/51 (31%)
 Frame = +3

Query: 519 PXPGXLXXXXPXTLPXXXPSXXPPRXPTVNXXPXPXXXRTPXPXYLPXTXP 671
           P P  +    P   P   P   P   P +   P P     P P   P T P
Sbjct: 240 PIPKPMPFPKPMPKPKPKPKPMPKPKPKLKLKPKPMPFPKPKPKLKPKTKP 290


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
 Frame = +3

Query: 519 PXPGXLXXXXPXTLPXXXPSXXPPRXPTVNXXPXPXXX---RTPXPXYLPXTXPP 674
           P P  +    P   P    +  PP  P+    P P      RTP P  +P   PP
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 319


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
 Frame = +3

Query: 519 PXPGXLXXXXPXTLPXXXPSXXPPRXPTVNXXPXPXXX---RTPXPXYLPXTXPP 674
           P P  +    P   P    +  PP  P+    P P      RTP P  +P   PP
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPP 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,748,515
Number of Sequences: 27780
Number of extensions: 129031
Number of successful extensions: 575
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)