Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_O09
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0292 - 15420378-15421229                                         30   2.4  
11_06_0610 - 25449085-25453284                                         28   7.4  

>08_02_0292 - 15420378-15421229
          Length = 283

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/52 (40%), Positives = 22/52 (42%)
 Frame = -1

Query: 447 GRRAXRSGXXXXXXRRRXXRRRXXRRRRSXVAXXXAAARHPRRSGASSPTSL 292
           GRR  RSG      RRR  RRR     R       AA   PRRS A +   L
Sbjct: 196 GRRGGRSGAGGGSRRRRTERRRG----REQAEEGRAAVAAPRRSRAGADAVL 243


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 26/119 (21%), Positives = 28/119 (23%)
 Frame = +1

Query: 367  PXPXXXPXXXPXXXXXXXXPAARCPPAXXGXXPRHPAXISX*XPNPXXXCXXXXXXGXRX 546
            P P   P   P        P    PP      P  P       P P              
Sbjct: 1129 PPPTVKPLPPPVPVSSPPPPEKSPPPPAPVILPPPPIKSP---PPPAPVISPPPPVKSPP 1185

Query: 547  PXXXPTXXPPXXQTPXPXAPXFSPXXXXXXXXXXXXXXLXXPXXXXXXPPXXGXXXXPP 723
            P       PP  ++P P AP  SP              L  P      PP       PP
Sbjct: 1186 PPAPVILPPPPVKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPP 1244



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 28/119 (23%), Positives = 31/119 (26%), Gaps = 6/119 (5%)
 Frame = +1

Query: 385  PXXXPXXXXXXXXPAARCPPAXXGXXPRHPAXISX*XPN-----PXXXCXXXXXXGXRXP 549
            P   P        P A  PP      P  PA +S   P      P              P
Sbjct: 1096 PPSTPEESSPPSVPKASSPPTEKSLPP--PATVSLPPPTVKPLPPPVPVSSPPPPEKSPP 1153

Query: 550  XXXPTXXPPXX-QTPXPXAPXFSPXXXXXXXXXXXXXXLXXPXXXXXXPPXXGXXXXPP 723
               P   PP   ++P P AP  SP              L  P      PP       PP
Sbjct: 1154 PPAPVILPPPPIKSPPPPAPVISPPPPVKSPPPPAPVILPPPPVKSPPPPAPVISPPPP 1212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,800,022
Number of Sequences: 37544
Number of extensions: 162276
Number of successful extensions: 496
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)