Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_O06
(977 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.011
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.035
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.43
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.00
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 24 4.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 4.0
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 26 9.3
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.011
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATPPPKPXTP 959
P PA PPPP PP A PPP P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.5 bits (63), Expect = 0.75
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 3/23 (13%)
Frame = +2
Query: 638 PPXPPXPPNTX---PXPPPPXXP 697
PP PP PP P PPPP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.9 bits (74), Expect = 0.035
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 882 PPXXNPPPPXPPXXXXATPPPKPXTPXXXKTK 977
PP PPPP PP + PP P P K +
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
Score = 29.5 bits (63), Expect = 0.75
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Frame = +2
Query: 638 PPXPPXPPNTXP--XPPPPXXP 697
PP PP PP P PPPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 1.00
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 873 PAXPPXXNPPPPXPPXXXXATPPPKPXTPXXXKTK 977
P PP PPPP P + PPP P K K
Sbjct: 6 PGNPP---PPPPPPGFEPPSQPPPPPPPGYVKKRK 37
Score = 29.1 bits (62), Expect = 1.00
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Frame = +2
Query: 632 NXPPXPPXP---PNTXPXPPPP 688
N PP PP P P + P PPPP
Sbjct: 8 NPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.1 bits (57), Expect = 4.0
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPP 917
P P P PPPP PP
Sbjct: 14 PPPGFEPPSQPPPPPPP 30
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.43
Identities = 14/31 (45%), Positives = 14/31 (45%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATPPPKPXTP 959
P P PP PPPP P A PP P P
Sbjct: 1705 PTPPPPPMSVPPPPSAP-PMPAGPPSAPPPP 1734
Score = 29.9 bits (64), Expect = 0.57
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATPPPKPXTP 959
P A PP + P P PP PP P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 27.1 bits (57), Expect = 4.0
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATPPPKPXTP 959
P P+ PP PP PP A+ P P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/26 (38%), Positives = 10/26 (38%)
Frame = +3
Query: 873 PAXPPXXNPPPPXPPXXXXATPPPKP 950
P P P PP TPPP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPP 1711
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 1.00
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -3
Query: 726 GXGGLGVVXXGXXGGGGXGXVLGGXGGXGG 637
G GG G G G GG G GG GG GG
Sbjct: 24 GRGGFGGGRGGARG-GGRGGARGGRGGRGG 52
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 873 PAXPPXXNPPPPXPPXXXXATPPPKPXTP 959
P PP PP P P PPP P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATP---PPKPXTPXXXKTK 977
P PA PP + PPP P ++P PPK P +K
Sbjct: 961 PRPAAPP--SIPPPLPVSNILSSPTSEPPKDHPPSAPLSK 998
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATPPPKPXTP 959
P PA P PP P A PP P P
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/31 (35%), Positives = 13/31 (41%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATPPPKPXTP 959
P A P + PPP P +PP P P
Sbjct: 161 PSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Frame = +3
Query: 867 PXPAXPPXXNPPP--PXPPXXXXATPPPKP 950
P P PP N P PP A PPP P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATPPPKPXTP 959
P PA P P PP P A P P P P
Sbjct: 458 PLPAGMPAAPPLPPAAPAPPPA-PAPAPAAP 487
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPP 917
P + P NPPPP PP
Sbjct: 179 PATSLPSDYNPPPPPPP 195
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATPPPKP 950
P PA PP PPP PP + P P
Sbjct: 234 PLPAPPPP--PPPTLPPQSTNTSQLPMP 259
Score = 23.0 bits (47), Expect(2) = 3.8
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = +2
Query: 641 PXPPXPPNTXPXPPPPXXPXXTT 709
P P P PPPP P +T
Sbjct: 229 PKQADPLPAPPPPPPPTLPPQST 251
Score = 22.2 bits (45), Expect(2) = 3.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 632 NXPPXPPXPP 661
N PP PP PP
Sbjct: 188 NPPPPPPPPP 197
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.2 bits (50), Expect(2) = 4.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 897 PPPPXPPXXXXATPPPKP 950
PPPP PP +P +P
Sbjct: 371 PPPPPPPELLNHSPKSRP 388
Score = 21.0 bits (42), Expect(2) = 4.0
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = +3
Query: 894 NPPPPXPP 917
+PPPP PP
Sbjct: 369 SPPPPPPP 376
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/32 (40%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = +3
Query: 867 PXPAXPPXXNPPPPXPPXXXXATP--PPKPXT 956
P PA P PP PP +P PP P T
Sbjct: 732 PTPAPTPAVKHHPPPPPVRSSISPSMPPAPLT 763
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 25.8 bits (54), Expect = 9.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 720 GGLGVVXXGXXGGGGXGXVLGGXGGXG 640
G G+ GGG G LGG GG G
Sbjct: 214 GAAGIDPMSLMGGGLGGAGLGGLGGAG 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,210
Number of Sequences: 5004
Number of extensions: 16797
Number of successful extensions: 308
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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