Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_O04
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces... 28 1.8
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 27 3.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 4.1
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 26 7.1
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 9.4
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.4
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 25 9.4
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.4
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 25 9.4
>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 312
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 115 FVDDFRSWRGVVLGRAASCCDLLRLS 38
FVD FR W + SC DLL+LS
Sbjct: 71 FVDGFRLWITMEYCDGGSCLDLLKLS 96
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 3.1
Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 1/133 (0%)
Frame = -1
Query: 466 SNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESG 287
S+T+ R H L ++ L S G +S +++ GK+ V P +
Sbjct: 271 SSTSAKRRRPDHNH-TSTLDASSSNTSLASTGPMTVSS---STVERKGKEASEVNPNSTS 326
Query: 286 GSKXCDFTSRVSHSKRETRRRSPFGSRRSMLSEKFLTRASRLRRSGYNSVRCRGSE*F-V 110
DF + +S S+ ++S G R R R +G NS C + V
Sbjct: 327 SVTFSDFAAAISRSRCSRCKKSKKGCDRQ-------RPCGRCRDAGLNSEDCISDDDMPV 379
Query: 109 DDFRSWRGVVLGR 71
+ R RG GR
Sbjct: 380 SNARKPRGRGRGR 392
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +3
Query: 57 QHDAALPSTTPRQERKSSTNYSEPRHRTELYPDLRSRDARVKN-FSDSIDLRDPNGLRRR 233
QH+ +L P + S+ + E + E + + RSRD N F S + D + R
Sbjct: 33 QHNGSLAHEGPTNQTDYSSRHHESQFSQEAHAEQRSRDDEEANSFEGSCNNSDQSWTSRV 92
Query: 234 VSR 242
S+
Sbjct: 93 TSK 95
>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 63 DAALPSTTPRQERKSSTNYSEPRHRTELYPDLRSRDARVKNFSDSIDLRDPNGLRRRVSR 242
D +PS P +SS+ S RH + +L S ++ D LRD + + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 9.4
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Frame = +3
Query: 24 SPGAGLSLNRSQHDAALPSTTPRQERKSSTNYSEPRHRTELYPDLRSRDARVK----NFS 191
S AG SL S ++ PS+ S + R + + P + +R +R + N S
Sbjct: 210 SKSAGFSLFESASNSFTPSSFIESANMESLSIPSRRRPSSIAP-IGTRPSRKEIAFSNSS 268
Query: 192 DSID--LRDPNGLRRRVSRFECETRLVKSHXLEPPDSRGSTVSISLP 326
D LR PN + S + P S GS+VS SLP
Sbjct: 269 TPTDQTLRPPNPPAANGNATPVTAVNNVSAVADSPQSTGSSVSSSLP 315
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -3
Query: 746 WGPF*VGXGFLGXG-GXXGXV 687
WGP VG GF+G G G G +
Sbjct: 453 WGPTYVGLGFIGFGWGCAGDI 473
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 472 CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA--SKAEASLAESG 323
CD+ + S G L H + R GG + + + N+ SK E +A SG
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSKYELGIAISG 652
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 177 VKNFSDSIDLRDPNGLRRRVSRFECETRLVKSHXLE 284
++ F DS+ L NGL +R R ET+ + + ++
Sbjct: 340 IQLFFDSVPLEKINGLEQRALRLLAETKQIDMNRMK 375
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +3
Query: 39 LSLNRSQHDAALPSTTPRQERKSSTNYSEPRHRTELYPDLRSRDARVKN 185
++L + + S +E STNYS P E PD + + V+N
Sbjct: 230 IALKEKESTSQDESNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVEN 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,016
Number of Sequences: 5004
Number of extensions: 46106
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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