Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_O04
(793 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homo... 29 2.9
AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditi... 29 2.9
AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditi... 29 2.9
AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein. 29 2.9
Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical pr... 29 5.0
AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopepti... 29 5.0
AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide ... 29 5.0
AC024788-3|AAF60614.2| 98|Caenorhabditis elegans Caenacin (cae... 28 8.8
>DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homolog
protein.
Length = 578
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 HN-TPPGTEVVYKLFRAPTSN*VISGPSEP*CTC*EFFR*HRSPRSKWASTSRLAF 244
HN +P G EV + N VI+GPSE CTC + F+ S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform a protein.
Length = 578
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 HN-TPPGTEVVYKLFRAPTSN*VISGPSEP*CTC*EFFR*HRSPRSKWASTSRLAF 244
HN +P G EV + N VI+GPSE CTC + F+ S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform b protein.
Length = 550
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 HN-TPPGTEVVYKLFRAPTSN*VISGPSEP*CTC*EFFR*HRSPRSKWASTSRLAF 244
HN +P G EV + N VI+GPSE CTC + F+ S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein.
Length = 550
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 HN-TPPGTEVVYKLFRAPTSN*VISGPSEP*CTC*EFFR*HRSPRSKWASTSRLAF 244
HN +P G EV + N VI+GPSE CTC + F+ S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>Z93387-2|CAB07650.1| 763|Caenorhabditis elegans Hypothetical
protein T02E9.3 protein.
Length = 763
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = -1
Query: 433 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKXCDFTSRV 254
FG L H G LP + S+ + ++++G + R+SGGSK +
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271
Query: 253 SH--SKRETRRRSPFGSRRSMLSEKFLTRASRL 161
H +K + R RSP ++ ++ L R+
Sbjct: 272 IHIVAKPQQRWRSPTICAETLAHDRLLAAKKRV 304
>AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopeptide
symporter OPT-3 protein.
Length = 701
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 126 PRHRTELYPDLRSRDARVKNFSDSIDLRDPN-GLRRRVSRFECETRLVK-SHXLEPPDSR 299
P+ RTEL + + + +KN S ID+ PN G V R + +VK + +E D+
Sbjct: 413 PKGRTELDAGIYTFNTGLKNESQEIDISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNG 472
Query: 300 GSTVSI 317
+ V +
Sbjct: 473 ATRVFV 478
>AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide
transporter protein 3 protein.
Length = 701
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +3
Query: 126 PRHRTELYPDLRSRDARVKNFSDSIDLRDPN-GLRRRVSRFECETRLVK-SHXLEPPDSR 299
P+ RTEL + + + +KN S ID+ PN G V R + +VK + +E D+
Sbjct: 413 PKGRTELDAGIYTFNTGLKNESQEIDISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNG 472
Query: 300 GSTVSI 317
+ V +
Sbjct: 473 ATRVFV 478
>AC024788-3|AAF60614.2| 98|Caenorhabditis elegans Caenacin
(caenorhabditis bacteriocin)protein 6 protein.
Length = 98
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -3
Query: 779 RXGXCGXGRPXWGPF*VGXGFLGXGGXXGXVXPGG 675
R G G GRP WG G G G GG G GG
Sbjct: 56 RWGGWGWGRPMWGG---GWGRRGWGGGWGRRGWGG 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,201,029
Number of Sequences: 27780
Number of extensions: 305547
Number of successful extensions: 908
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -