Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_O02
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.078
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 1.0
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 28 1.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.7
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 1.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.0
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 26 6.8
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 9.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 25 9.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 32.3 bits (70), Expect = 0.078
Identities = 23/85 (27%), Positives = 24/85 (28%)
Frame = +3
Query: 426 QXPXAXXXXAPXXPXNPPPXXPXXPXXXXGXXXRXHXTPHXQXXPPPTPPPXXPPXXXRS 605
Q P A P PPP P T PP+ PP PP S
Sbjct: 375 QPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS 434
Query: 606 XVPFXXXXGPPREXXXPXHAPXPXP 680
P G P P AP P
Sbjct: 435 APP-SLPMGAPAAPPLPPSAPIAPP 458
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Frame = +1
Query: 418 PPXKXXXXXXXRPPRDRXTPHX-IXPXTPPPRXXXXXGXTXPPTPXPXPLQPXPXTXPHX 594
PP +PP + + + P PPPR PP P P P + P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 595 XXDXXXLS 618
LS
Sbjct: 373 GRQPPPLS 380
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect(2) = 1.0
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 558 PPPTPPPXXPP 590
PPP PPP PP
Sbjct: 238 PPPPPPPTLPP 248
Score = 21.4 bits (43), Expect(2) = 1.0
Identities = 14/54 (25%), Positives = 16/54 (29%)
Frame = +3
Query: 417 PAXQXPXAXXXXAPXXPXNPPPXXPXXPXXXXGXXXRXHXTPHXQXXPPPTPPP 578
P+ A AP +PPP P PPP PPP
Sbjct: 148 PSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNP----PPPPPPPP 197
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 8/58 (13%)
Frame = +3
Query: 540 PHXQXXPPPTPP------PXXPPXXXRSXV--PFXXXXGPPREXXXPXHAPXPXPXLL 689
PH Q P P PP P PP + + PPR P +A P P L
Sbjct: 416 PHVQGFPAPFPPFMMPGLPQMPPMMMNAIAGQVYHNNRNPPRTNSRPSNASVPPPSSL 473
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/80 (28%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Frame = -1
Query: 679 GXGXGAWXGXXXSRGGPXXXXKGTXDRXXXGGXXG-----GGVGGGXXWXWGVXXXRXXX 515
G G + G GGP G GG GG GGG G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 514 PXXXXGXXGXXGGGFXGXXG 455
P G G GGG G G
Sbjct: 244 PGGFGGGLGGFGGGPGGFGG 263
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/68 (32%), Positives = 23/68 (33%)
Frame = -1
Query: 667 GAWXGXXXSRGGPXXXXKGTXDRXXXGGXXGGGVGGGXXWXWGVXXXRXXXPXXXXGXXG 488
G+ G SRGG G R GG GG GGG G R G G
Sbjct: 6 GSRGGRGGSRGGRGGFNGG---RGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62
Query: 487 XXGGGFXG 464
GG G
Sbjct: 63 GRGGAKGG 70
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.0
Identities = 12/40 (30%), Positives = 14/40 (35%)
Frame = +1
Query: 457 PRDRXTPHXIXPXTPPPRXXXXXGXTXPPTPXPXPLQPXP 576
P+ P P PPP + PP P P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +3
Query: 537 TPHXQXXPPPTPPPXXPPXXXRSXVPFXXXXGP 635
TP Q PP PPP P VP P
Sbjct: 348 TPQVQGSRPPPPPPMPAPIYNVPNVPTVPTVSP 380
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Frame = +3
Query: 465 PXNPPPXXPXXPXXXXGXXXRXHXTPHXQXX-PPPTPPPXXPPXXXRSXVP 614
P PP P P Q PPPT PP P S P
Sbjct: 75 PLTAPPPYTAEPEARYNSTIHNPMPPMSQAYRPPPTEPPTVPAYETSSEFP 125
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -1
Query: 697 GXXXRXGXGXGAWXGXXXSRGGPXXXXKGTXDRXXXGGXXGGGVGG 560
G R G G G G SRGG +G GG GG GG
Sbjct: 133 GPAGRGGRG-GFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,097,956
Number of Sequences: 5004
Number of extensions: 12460
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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