Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_N23
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.047
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.76 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 583 PXNPPXNPPPTXKXXXXDXPPPPVSGFXK 497
           P NPP  PPP         PPPP  G+ K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = +1

Query: 514 PGGGGGXGXXFSXLGGGFXGGXXGXGXTG 600
           PGG GG    F    GGF GG  G G  G
Sbjct: 244 PGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 514 PGGGGGXGXXFSXLGGGFXGGXXGXG 591
           PGG GG    F    GGF GG  G G
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFG 262


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/59 (28%), Positives = 18/59 (30%)
 Frame = -3

Query: 691  PPXKPPXXXPLQKXKTXXPXXPXKXXXEXXALFXPXPXNPPXNPPPTXKXXXXDXPPPP 515
            PP +P    P Q      P  P        A   P P  PP  PPP          P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSA--PPMPAGPPSAPPPPLPASSAPSVPNP 1746



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = -2

Query: 689  PXXTPPXXTPPEXKNPXTXXPXEXXXGXXRPVXPXPXKPPXKPPP 555
            P   P    PP+   P T  P            P P  PP  PPP
Sbjct: 1690 PPVRPQSAAPPQMSAP-TPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +3

Query: 498 FXNPETGGGGXSXXXXFXVGGGFXGGFXGXGXNR 599
           F  P TGGG       F   GGF GG  G G  R
Sbjct: 440 FSTPRTGGGSRGGRGGFGGRGGF-GGRGGFGGGR 472


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 20/81 (24%), Positives = 21/81 (25%), Gaps = 3/81 (3%)
 Frame = -2

Query: 767  PPXXTPXXXPXKGPXPXGXXX---PXXXXPXXTPPXXTPPEXKNPXTXXPXEXXXGXXRP 597
            PP   P       P P G      P    P    P   PP  K      P         P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180

Query: 596  VXPXPXKPPXKPPPNXEXXXP 534
            V       P  PPP+     P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVP 1201



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 20/76 (26%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
 Frame = -2

Query: 767  PPXXTPXXXPXKGPXPXGXXXPXXXXPXXTPPXXTP----PEXKNPXTXXPXEXXXGXXR 600
            PP   P   P   P P     P    P   PP   P    P    P +  P         
Sbjct: 1131 PPVPVPSGAPPV-PKP-SVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGV 1188

Query: 599  PVXPXPXKPPXKPPPN 552
            P  P P + P  P P+
Sbjct: 1189 PPVPPPSEAPPVPKPS 1204


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/70 (25%), Positives = 18/70 (25%), Gaps = 1/70 (1%)
 Frame = -2

Query: 776 PPXPPXXTPXXXPXKGPXPXGXXXPXXXXP-XXTPPXXTPPEXKNPXTXXPXEXXXGXXR 600
           PP PP       P   P P     P    P    PP         P    P     G  R
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791

Query: 599 PVXPXPXKPP 570
              P P   P
Sbjct: 792 YYAPAPQAEP 801



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -3

Query: 589 PXPXNPPXNPPPTXKXXXXDXPPPP 515
           P    PP  PPP         PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,782
Number of Sequences: 5004
Number of extensions: 18975
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)