Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_N21
         (707 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85237-1|CAA59494.1|  793|Homo sapiens human splicing factor pro...   150   6e-36
CR456575-1|CAG30461.1|  793|Homo sapiens SF3A1 protein.               150   6e-36
BC007684-1|AAH07684.1|  793|Homo sapiens splicing factor 3a, sub...   150   6e-36
BC001976-1|AAH01976.1|  793|Homo sapiens splicing factor 3a, sub...   150   6e-36
AC004997-4|AAC23435.1|  793|Homo sapiens spliceosome associated ...   150   6e-36

>X85237-1|CAA59494.1|  793|Homo sapiens human splicing factor
           protein.
          Length = 793

 Score =  150 bits (363), Expect = 6e-36
 Identities = 81/152 (53%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
 Frame = -1

Query: 497 PLPPRPDRVVVKK-YNPKEAKPR--AAAGDEWLVLPITGEKIPASKVAEHVRIGLLDPRW 327
           PLPP PD+V+V+K Y+PK +KP   A A DE+LV PITGEKIPASK+ EH+RIGLLDPRW
Sbjct: 379 PLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRW 438

Query: 326 LXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGVGDXXXXXXXXXXXXXXKRD 147
           L                 APG  IE+SLKQLAERRTDIFGV +              K +
Sbjct: 439 LEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGV-EETAIGKKIGEEEIQKPE 497

Query: 146 ERVTWDGHTSSVEAATRAARAHITLEDQIQQI 51
           E+VTWDGH+ S+    +AA+A+ITL++QI+ I
Sbjct: 498 EKVTWDGHSGSMARTQQAAQANITLQEQIEAI 529


>CR456575-1|CAG30461.1|  793|Homo sapiens SF3A1 protein.
          Length = 793

 Score =  150 bits (363), Expect = 6e-36
 Identities = 81/152 (53%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
 Frame = -1

Query: 497 PLPPRPDRVVVKK-YNPKEAKPR--AAAGDEWLVLPITGEKIPASKVAEHVRIGLLDPRW 327
           PLPP PD+V+V+K Y+PK +KP   A A DE+LV PITGEKIPASK+ EH+RIGLLDPRW
Sbjct: 379 PLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRW 438

Query: 326 LXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGVGDXXXXXXXXXXXXXXKRD 147
           L                 APG  IE+SLKQLAERRTDIFGV +              K +
Sbjct: 439 LEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGV-EETAIGKKIGEEEIQKPE 497

Query: 146 ERVTWDGHTSSVEAATRAARAHITLEDQIQQI 51
           E+VTWDGH+ S+    +AA+A+ITL++QI+ I
Sbjct: 498 EKVTWDGHSGSMARTQQAAQANITLQEQIEAI 529


>BC007684-1|AAH07684.1|  793|Homo sapiens splicing factor 3a,
           subunit 1, 120kDa protein.
          Length = 793

 Score =  150 bits (363), Expect = 6e-36
 Identities = 81/152 (53%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
 Frame = -1

Query: 497 PLPPRPDRVVVKK-YNPKEAKPR--AAAGDEWLVLPITGEKIPASKVAEHVRIGLLDPRW 327
           PLPP PD+V+V+K Y+PK +KP   A A DE+LV PITGEKIPASK+ EH+RIGLLDPRW
Sbjct: 379 PLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRW 438

Query: 326 LXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGVGDXXXXXXXXXXXXXXKRD 147
           L                 APG  IE+SLKQLAERRTDIFGV +              K +
Sbjct: 439 LEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGV-EETAIGKKIGEEEIQKPE 497

Query: 146 ERVTWDGHTSSVEAATRAARAHITLEDQIQQI 51
           E+VTWDGH+ S+    +AA+A+ITL++QI+ I
Sbjct: 498 EKVTWDGHSGSMARTQQAAQANITLQEQIEAI 529


>BC001976-1|AAH01976.1|  793|Homo sapiens splicing factor 3a,
           subunit 1, 120kDa protein.
          Length = 793

 Score =  150 bits (363), Expect = 6e-36
 Identities = 81/152 (53%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
 Frame = -1

Query: 497 PLPPRPDRVVVKK-YNPKEAKPR--AAAGDEWLVLPITGEKIPASKVAEHVRIGLLDPRW 327
           PLPP PD+V+V+K Y+PK +KP   A A DE+LV PITGEKIPASK+ EH+RIGLLDPRW
Sbjct: 379 PLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRW 438

Query: 326 LXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGVGDXXXXXXXXXXXXXXKRD 147
           L                 APG  IE+SLKQLAERRTDIFGV +              K +
Sbjct: 439 LEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGV-EETAIGKKIGEEEIQKPE 497

Query: 146 ERVTWDGHTSSVEAATRAARAHITLEDQIQQI 51
           E+VTWDGH+ S+    +AA+A+ITL++QI+ I
Sbjct: 498 EKVTWDGHSGSMARTQQAAQANITLQEQIEAI 529


>AC004997-4|AAC23435.1|  793|Homo sapiens spliceosome associated
           protein 114 (SF3a) protein.
          Length = 793

 Score =  150 bits (363), Expect = 6e-36
 Identities = 81/152 (53%), Positives = 101/152 (66%), Gaps = 3/152 (1%)
 Frame = -1

Query: 497 PLPPRPDRVVVKK-YNPKEAKPR--AAAGDEWLVLPITGEKIPASKVAEHVRIGLLDPRW 327
           PLPP PD+V+V+K Y+PK +KP   A A DE+LV PITGEKIPASK+ EH+RIGLLDPRW
Sbjct: 379 PLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKIPASKMQEHMRIGLLDPRW 438

Query: 326 LXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGVGDXXXXXXXXXXXXXXKRD 147
           L                 APG  IE+SLKQLAERRTDIFGV +              K +
Sbjct: 439 LEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGV-EETAIGKKIGEEEIQKPE 497

Query: 146 ERVTWDGHTSSVEAATRAARAHITLEDQIQQI 51
           E+VTWDGH+ S+    +AA+A+ITL++QI+ I
Sbjct: 498 EKVTWDGHSGSMARTQQAAQANITLQEQIEAI 529


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,996,184
Number of Sequences: 237096
Number of extensions: 905884
Number of successful extensions: 3518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3484
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)