Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_N21
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.      95   6e-20
AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp (sp...    95   6e-20
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF038608-17|AAC25822.2|  425|Caenorhabditis elegans Hypothetical...    29   3.3  
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U97010-2|AAB52319.1|  198|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U58748-7|AAM97987.1|  399|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    28   7.5  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    28   7.5  

>U09415-1|AAA82164.1|  655|Caenorhabditis elegans Ceprp21 protein.
          Length = 655

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
 Frame = -1

Query: 521 DAPRADEAPLPPRPDR-VVVKKYNPKE---AKPRAAAGDEWLVLPITGEKIPASKVAEHV 354
           +AP A  APLPP   + V+V+ Y+PK     KP+A   + W++ P+TGE+IP+ K+AEHV
Sbjct: 311 EAP-AFTAPLPPTKQKDVIVRDYDPKRNVTQKPKAV--ENWIISPLTGERIPSDKLAEHV 367

Query: 353 RIGLLDPRWLXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGVGDXXXXXXXX 174
           R   +D ++                 LA GA I  +L   AERRTDIFGVG         
Sbjct: 368 RYNTVDSQYKEDRDRHIGERSTEEPVLALGADISRNLGNFAERRTDIFGVGGEQTMIGKK 427

Query: 173 XXXXXXKR--DERVTWDGHTSSVEAATRAARAHITLEDQIQQI 51
                  +    ++ WDG   + +  TRA +  +TL+ QI +I
Sbjct: 428 LGEEDNSQQGQNKLIWDGTEETRDMITRAVQNKVTLDQQINEI 470


>AF106576-5|AAC78179.1|  655|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 21 protein.
          Length = 655

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 58/163 (35%), Positives = 84/163 (51%), Gaps = 6/163 (3%)
 Frame = -1

Query: 521 DAPRADEAPLPPRPDR-VVVKKYNPKE---AKPRAAAGDEWLVLPITGEKIPASKVAEHV 354
           +AP A  APLPP   + V+V+ Y+PK     KP+A   + W++ P+TGE+IP+ K+AEHV
Sbjct: 311 EAP-AFTAPLPPTKQKDVIVRDYDPKRNVTQKPKAV--ENWIISPLTGERIPSDKLAEHV 367

Query: 353 RIGLLDPRWLXXXXXXXXXXXXXXXALAPGAAIEASLKQLAERRTDIFGVGDXXXXXXXX 174
           R   +D ++                 LA GA I  +L   AERRTDIFGVG         
Sbjct: 368 RYNTVDSQYKEDRDRHIGERSTEEPVLALGADISRNLGNFAERRTDIFGVGGEQTMIGKK 427

Query: 173 XXXXXXKR--DERVTWDGHTSSVEAATRAARAHITLEDQIQQI 51
                  +    ++ WDG   + +  TRA +  +TL+ QI +I
Sbjct: 428 LGEEDNSQQGQNKLIWDGTEETRDMITRAVQNKVTLDQQINEI 470


>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical protein
            F35A5.1 protein.
          Length = 1274

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 524  QDAPRADEAPLPPRPDRVVVKKYNPK-EAKPRAAAGDEWLVLPITGEKIPASKVAEHVR 351
            +DAP+    P  P P + V +K   K  AKPR  +  + + +P   ++ P + V   V+
Sbjct: 926  KDAPKVAAKPRDPSPKKAVPEKEPAKVAAKPRDLSPKKAIPIPANTQEAPPTPVKNPVK 984


>AF038608-17|AAC25822.2|  425|Caenorhabditis elegans Hypothetical
           protein C09G12.9 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 536 TPKSSFPLPCLARGYRPADGTEFYPPFPQVPHQTPIPIRIQFASQY 673
           T   + P P  +  Y P+ G   Y P+  VP  TP P+    AS Y
Sbjct: 184 TGSGAAPYPPSSTPY-PSAGAMGYNPYMNVPQSTPYPMGASGASPY 228


>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
            protein Y92H12A.5 protein.
          Length = 1375

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 554  PLPCLARGYRPADGTEFYPPFPQVPHQTPIPIR 652
            PL  L+  Y PA  +E YP  P VP    I +R
Sbjct: 941  PLVVLSHLYTPASSSELYPLRPFVPKLLEIALR 973


>Z70756-9|CAA94797.1|  275|Caenorhabditis elegans Hypothetical
           protein T06E4.11 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 578 YRPADGTEFYPPFPQVPHQTPIPIRIQFASQY 673
           Y P    +  PP  Q P Q P PI+ QF  QY
Sbjct: 117 YSPQQAQQQLPP-SQYPEQGPGPIQQQFPQQY 147


>U97010-2|AAB52319.1|  198|Caenorhabditis elegans Hypothetical
           protein W08A12.3 protein.
          Length = 198

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 515 PRADEAPLPPRPDRVVVKK 459
           PR D  PLPP P+ +V+ +
Sbjct: 92  PRVDSTPLPPLPEPIVIPR 110


>U58748-7|AAM97987.1|  399|Caenorhabditis elegans Hypothetical
           protein ZK180.5c protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 503 EAPLPPRPDRVVVKKYNPKEAKPRAAAGDEWLVLPITGEKIP 378
           E P P  P+  VV++ + +E  P  AA     V P+T E  P
Sbjct: 304 EEPAPAVPEATVVEESHFEEPAPAPAATSAPFVEPVTEESKP 345


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -1

Query: 608  DRTQSHRPDDNRVQDMXXXXXXXXXXXEQ-DAPRADEAPLPPRPDRV 471
            DR++ H  D NR Q+             Q D  R DEA    RPDR+
Sbjct: 945  DRSRHHNQDRNRRQNHDRNRHQSQGRNRQQDHERGDEAHEEARPDRI 991


>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 554 PLPCLARGYRPADGTEFYPPFPQVPHQTPI 643
           P P   RG RP  G    PP PQ P + P+
Sbjct: 97  PPPPRHRGRRPTGGRGRRPPTPQAPVRVPM 126


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 554 PLPCLARGYRPADGTEFYPPFPQVPHQTPI 643
           P P   RG RP  G    PP PQ P + P+
Sbjct: 148 PPPPRHRGRRPTGGRGRRPPTPQAPVRVPM 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,554,302
Number of Sequences: 27780
Number of extensions: 129887
Number of successful extensions: 477
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)