Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_N17
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    27   1.6  

>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -3

Query: 694 PPPPXXGGGXXXXXFFXGXXPPPP 623
           PPPP  GG       F G  PPPP
Sbjct: 75  PPPPGPGGIPPPPPMFAGGIPPPP 98



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 694 PPPPXXGGGXXXXXFFXGXXPPPP 623
           PPPP   GG        G  PPPP
Sbjct: 85  PPPPMFAGGIPPPPPMMGGIPPPP 108



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -3

Query: 694 PPPPXXGGGXXXXXFFXGXXPPPP 623
           PPPP  GG       F    PPPP
Sbjct: 96  PPPPMMGGIPPPPPMFGAPPPPPP 119


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 26.6 bits (56), Expect(2) = 1.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 612 GGXXGGGGXXPXKKXXXXXPPPXXG 686
           GG  GGGG  P        PPP  G
Sbjct: 24  GGGGGGGGCAPAAPACAPPPPPMCG 48



 Score = 22.6 bits (46), Expect(2) = 1.6
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 774 PPPPPXXXXXXXXXXPPP 827
           PPPPP          PPP
Sbjct: 41  PPPPPMCGCAPPPPPPPP 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,726,989
Number of Sequences: 27780
Number of extensions: 265601
Number of successful extensions: 587
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)