Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_N13
(716 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha prot... 32 1.8
CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein. 32 1.8
BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directe... 32 1.8
BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directe... 32 1.8
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 31 4.1
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 31 4.1
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 31 4.1
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 31 4.1
AK091703-1|BAC03727.1| 571|Homo sapiens protein ( Homo sapiens ... 30 9.5
AB209253-1|BAD92490.1| 458|Homo sapiens two pore segment channe... 30 9.5
>L24559-1|AAA16459.1| 598|Homo sapiens DNA polymerase alpha
protein.
Length = 598
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 666 PQ*GNXXQNLHTPRHDVCKRSVRSRCPHPLEIPSGYS 556
P G+ + + TP + KRSV +R PH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>CR456737-1|CAG33018.1| 598|Homo sapiens POLA2 protein.
Length = 598
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 666 PQ*GNXXQNLHTPRHDVCKRSVRSRCPHPLEIPSGYS 556
P G+ + + TP + KRSV +R PH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC002990-1|AAH02990.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 666 PQ*GNXXQNLHTPRHDVCKRSVRSRCPHPLEIPSGYS 556
P G+ + + TP + KRSV +R PH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>BC001347-1|AAH01347.1| 598|Homo sapiens polymerase (DNA directed),
alpha 2 (70kD subunit) protein.
Length = 598
Score = 32.3 bits (70), Expect = 1.8
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 666 PQ*GNXXQNLHTPRHDVCKRSVRSRCPHPLEIPSGYS 556
P G+ + + TP + KRSV +R PH L PS +S
Sbjct: 116 PSKGSQKRAISTPETPLTKRSVSTRSPHQLLSPSSFS 152
>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.1
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 359 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 225
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.1
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 359 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 225
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
receptor-interacting protein complex component DRIP205
protein.
Length = 1566
Score = 31.1 bits (67), Expect = 4.1
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 359 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 225
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP220
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 4.1
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -1
Query: 359 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 225
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>AK091703-1|BAC03727.1| 571|Homo sapiens protein ( Homo sapiens
cDNA FLJ34384 fis, clone HCHON1000131, weakly similar to
KES1 PROTEIN. ).
Length = 571
Score = 29.9 bits (64), Expect = 9.5
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -1
Query: 380 TRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPL 201
T PS N P+T P+ + S + A H+ S SS + + GS S LTH S
Sbjct: 106 TSPSHVNLSPNTVPEFSYSSSEDELYDADEFHQ--SGSSPKRLIDSSGSASVLTHSSSGN 163
Query: 200 SFS-PD 186
S PD
Sbjct: 164 SLKRPD 169
>AB209253-1|BAD92490.1| 458|Homo sapiens two pore segment channel 2
variant protein.
Length = 458
Score = 29.9 bits (64), Expect = 9.5
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 339 GRRRRFTIRST--GSGM*FPAATMRGFSCRAAFSKWRSDADCRYLLRESSSRSPWRS 503
G R F + S+ G G FP AT RG S F + S + L + SPW++
Sbjct: 253 GTRAAFEVLSSMVGEGGAFPQATRRGPSTSLRFCRAPSSSSATTTLTTWGTSSPWQT 309
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,156,457
Number of Sequences: 237096
Number of extensions: 2179085
Number of successful extensions: 9559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9551
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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