Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_N11
         (1085 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.092
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    31   0.21 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   4.0  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   6.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.092
 Identities = 18/55 (32%), Positives = 19/55 (34%)
 Frame = +1

Query: 499 PPPTKKKIXFXXXGPPPFFXXXXFFSPQKKXGGGXXXPPAXGGGGGGXXXPPPPP 663
           PPP    +      P P         P    GG    PP  G  G G   PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP----PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.1 bits (67), Expect = 0.28
 Identities = 15/35 (42%), Positives = 15/35 (42%)
 Frame = -2

Query: 709 GPPPXXXPVFXXXPQXGGGGXGXXPPPPPPXXGGG 605
           GPPP   P     P   G G    PPPPP    GG
Sbjct: 760 GPPPPPPP-----PGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 606 PPPXXGGGGGGXXPXPPPP 662
           PPP    G G   P PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -2

Query: 706 PPPXXXPVFXXXPQXGGGGXGXXPPPPPP 620
           PPP         P    G  G  PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 20/65 (30%), Positives = 20/65 (30%)
 Frame = -3

Query: 780 PPPXXXGEXXGXXXGVXXXXXXGXGPPPXXXPXFXXXPKXGGGGXGXXPPPPPXGXGXXX 601
           PPP           G       G G P    P     P  G    G   PPPP G G   
Sbjct: 83  PPPMDPSMRGSLLSGPGVARPAGRGIPLGQAPVGLAGPVRG---VGYTAPPPPAGFGRGA 139

Query: 600 TPPXF 586
            PP F
Sbjct: 140 PPPGF 144


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 22.6 bits (46), Expect(2) = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 646 GXXPPPPPP 620
           G  PPPPPP
Sbjct: 7   GNPPPPPPP 15



 Score = 22.6 bits (46), Expect(2) = 4.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 637 PPPPPPXXG 611
           PPPPPP  G
Sbjct: 9   PPPPPPPPG 17


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 670 PQXGGGGXGXXPPPPPP 620
           P  G    G  PPPPPP
Sbjct: 295 PSSGDSANGGLPPPPPP 311


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -2

Query: 706 PPPXXXPVFXXXPQXGGGGXGXXPPPPPP 620
           PPP         P   G      PPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,054
Number of Sequences: 5004
Number of extensions: 26540
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 571756234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)