Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_N08
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    35   0.067
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   0.83 
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   7.7  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -1

Query: 720 PFPWDFGXHQPRSSNPXIPNTNHPQX*HPFPSIPXXXXXREFAPGLKPPLSSEAPS-AYL 544
           P P +     P   +P  P+ ++P   +P PS P      E A  + PP   E PS  Y 
Sbjct: 355 PAPQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSPSYPAEPAYSVPPPAKPEQPSGGYD 414

Query: 543 TPS 535
            PS
Sbjct: 415 APS 417


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 720 PFPWDFGXHQPRSSNPXIPNTNHPQX*HPFPSIPXXXXXREFAPGLKPPLSSEAPSAYLT 541
           P P+     QP+ + P  P   +PQ   P P+ P     +   P   PPL+S   +A   
Sbjct: 35  PAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAPYPQHAVPAPAPPLASYPQNAVPV 94

Query: 540 PS 535
           P+
Sbjct: 95  PA 96


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 576  PLSSEAPSAYLTPSSLGMXKGVSPP 502
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 576  PLSSEAPSAYLTPSSLGMXKGVSPP 502
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,374,606
Number of Sequences: 27780
Number of extensions: 306516
Number of successful extensions: 897
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)