Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_N04
         (773 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1749 - 39636951-39638102                                         29   5.4  
05_03_0587 + 15859009-15859070,15860022-15860103,15860603-158607...    28   9.5  

>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 131 SIVTAAAPPFKPKRITA 181
           S+ +AAAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>05_03_0587 +
           15859009-15859070,15860022-15860103,15860603-15860785,
           15861522-15861719,15861858-15862004,15862485-15862856
          Length = 347

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 315 TNRTKTSYYYYSRNDNSLQVPY 380
           TNR K +Y YY  N N + V Y
Sbjct: 319 TNRRKYTYEYYGHNPNGMHVYY 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,989,636
Number of Sequences: 37544
Number of extensions: 404262
Number of successful extensions: 787
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)