Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_M23
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   209   4e-55
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   209   4e-55
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.53 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.8  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   6.6  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.7  
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   8.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  209 bits (510), Expect = 4e-55
 Identities = 102/161 (63%), Positives = 121/161 (75%)
 Frame = -3

Query: 601 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 422
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 421 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 242
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 241 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 119
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = -2

Query: 632 GKGYKGVTFRWHTKKLPRKTHQG 564
           GKG +G T RW TK+LPRKTH+G
Sbjct: 223 GKGNEGTTARWGTKRLPRKTHRG 245



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 744 GTXEDKVNGPENILXKPIPVDSVFAQDEMIDCIGVTXGQ 628
           G+  DKV        K + + S F Q+EMID IGVT G+
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  209 bits (510), Expect = 4e-55
 Identities = 102/161 (63%), Positives = 121/161 (75%)
 Frame = -3

Query: 601 GTQRSYPVRHTKGLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKK 422
           GT+R  P +  +GLRKVACIGAWHP+ V +TVARAG  GY HRT++N KIYRIG G    
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---D 289

Query: 421 DGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVH 242
           D K    NAST++D +EK ITPMGGF  YG V NDFVM+ G   GP KR++TLRKSL  H
Sbjct: 290 DAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTH 345

Query: 241 TKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 119
           T R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 346 TSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = -2

Query: 632 GKGYKGVTFRWHTKKLPRKTHQG 564
           GKG +G T RW TK+LPRKTH+G
Sbjct: 223 GKGNEGTTARWGTKRLPRKTHRG 245



 Score = 36.3 bits (80), Expect = 0.005
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 744 GTXEDKVNGPENILXKPIPVDSVFAQDEMIDCIGVTXGQ 628
           G+  DKV        K + + S F Q+EMID IGVT G+
Sbjct: 186 GSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGK 224


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 18/67 (26%), Positives = 35/67 (52%)
 Frame = +2

Query: 410 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVA 589
           NFA+L+  SL ++ +F++H +T    +   T+Y   +   +  +N  N  K   + + + 
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432

Query: 590 SLCANEK 610
           SL AN +
Sbjct: 433 SLPANSR 439


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 377 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 499
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 140 HGYTQEGSYSRRSCGYHNPS 81
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 362 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 490
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 422 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 547
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 574 VLRGSFFVCQRKVTPLYPLPXGDTNAVNHFILGKHRIDRDRFLQNVLWXIHFVLXG 741
           + R +  +C RK+  L+PL   D      F+  + R + D+ L  + W +  ++ G
Sbjct: 35  IARHTVHLCVRKIFSLHPLTETD------FLPNELRSEEDQTLIGIFWFLPPIIEG 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,650
Number of Sequences: 5004
Number of extensions: 66684
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)