Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_M21
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 31 1.2
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 31 1.2
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 30 2.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 2.7
Z75546-8|CAC42331.2| 640|Caenorhabditis elegans Hypothetical pr... 29 3.6
AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear recep... 29 3.6
AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear recep... 29 3.6
AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormo... 29 3.6
AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormo... 29 3.6
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 6.3
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/101 (22%), Positives = 30/101 (29%), Gaps = 1/101 (0%)
Frame = -1
Query: 732 GXXXGXPPPPXXXKXFXSPPPPXGXXXXXXXXKKKXXXPP-XXXXXXXPPXXXKXFFFXK 556
G G PPPP + + PPPP + PP PP + +
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGY 734
Query: 555 XXXXXXXXXXGXXKKKXXPPPXGEXTPXXPPPXXGGGXXPP 433
+ PPP G+ P GG PP
Sbjct: 735 PPPPQPGHPYQQPYGQMPPPPHGQ---YQPQQQQGGPMGPP 772
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/101 (22%), Positives = 30/101 (29%), Gaps = 1/101 (0%)
Frame = -1
Query: 732 GXXXGXPPPPXXXKXFXSPPPPXGXXXXXXXXKKKXXXPP-XXXXXXXPPXXXKXFFFXK 556
G G PPPP + + PPPP + PP PP + +
Sbjct: 675 GGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGY 734
Query: 555 XXXXXXXXXXGXXKKKXXPPPXGEXTPXXPPPXXGGGXXPP 433
+ PPP G+ P GG PP
Sbjct: 735 PPPPQPGHPYQQPYGQMPPPPHGQ---YQPQQQQGGPMGPP 772
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/84 (23%), Positives = 22/84 (26%)
Frame = -1
Query: 714 PPPPXXXKXFXSPPPPXGXXXXXXXXKKKXXXPPXXXXXXXPPXXXKXFFFXKXXXXXXX 535
PPPP PPP PP PP
Sbjct: 33 PPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGTPPPPPTG------EPQDLS 86
Query: 534 XXXGXXKKKXXPPPXGEXTPXXPP 463
G ++ PPP G TP PP
Sbjct: 87 AEEGNASRRPPPPPKGTGTPPPPP 110
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/84 (23%), Positives = 22/84 (26%)
Frame = -1
Query: 714 PPPPXXXKXFXSPPPPXGXXXXXXXXKKKXXXPPXXXXXXXPPXXXKXFFFXKXXXXXXX 535
PPPP PPP PP PP
Sbjct: 127 PPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTG-------EPQDL 179
Query: 534 XXXGXXKKKXXPPPXGEXTPXXPP 463
G ++ PPP G TP PP
Sbjct: 180 STEGNASRRPPPPPKGTGTPPPPP 203
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/85 (24%), Positives = 24/85 (28%)
Frame = -1
Query: 714 PPPPXXXKXFXSPPPPXGXXXXXXXXKKKXXXPPXXXXXXXPPXXXKXFFFXKXXXXXXX 535
PPPP +PPP PP PP
Sbjct: 220 PPPPPKGTGSPTPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTG-------EPQDL 272
Query: 534 XXXGXXKKKXXPPPXGEXTPXXPPP 460
G ++ PPP G TP PPP
Sbjct: 273 SGEGNASRRPPPPPKGTGTP--PPP 295
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/88 (23%), Positives = 24/88 (27%)
Frame = -1
Query: 714 PPPPXXXKXFXSPPPPXGXXXXXXXXKKKXXXPPXXXXXXXPPXXXKXFFFXKXXXXXXX 535
PPPP PPP PP PP
Sbjct: 96 PPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKGTGSPPPPPTG-------EPQDL 148
Query: 534 XXXGXXKKKXXPPPXGEXTPXXPPPXXG 451
G ++ PPP G +P PPP G
Sbjct: 149 SGEGNASRRPPPPPKGTGSP--PPPPTG 174
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/84 (22%), Positives = 22/84 (26%)
Frame = -1
Query: 714 PPPPXXXKXFXSPPPPXGXXXXXXXXKKKXXXPPXXXXXXXPPXXXKXFFFXKXXXXXXX 535
PPPP PPP PP PP
Sbjct: 158 PPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPPPTG-------EPQDL 210
Query: 534 XXXGXXKKKXXPPPXGEXTPXXPP 463
G ++ PPP G +P PP
Sbjct: 211 SAEGYASRRPPPPPKGTGSPTPPP 234
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = -1
Query: 501 PPPXGEXTPXXPPPXXGG--GXXPP 433
PPP G P PPP GG G PP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = -1
Query: 501 PPPXGEXTPXXPPPXXGG--GXXPP 433
PPP G P PPP GG G PP
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = -1
Query: 501 PPPXGEXTPXXPPPXXGG--GXXPP 433
PPP G P PPP GG G PP
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPP 369
>Z75546-8|CAC42331.2| 640|Caenorhabditis elegans Hypothetical
protein R05D11.9 protein.
Length = 640
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = +3
Query: 60 QQIAARRCSTEHNTPPGTEVVYRLFRAPNIELS*XFPDL 176
++I++ ST+ N P +++++F+ P+I+L P L
Sbjct: 22 REISSNIISTDKNVPISKMIIHKIFKNPHIDLCSILPPL 60
>AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 281
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 46 AGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRTSN*VNXFRTFXSRECTFFKKKKPD*H 225
AG+ N+ QHD L ST+ + SS +S + S F R F +PD
Sbjct: 68 AGMDANKFQHDRDLISTSTSESSDSSGSFSFSQRSKVPKSMANFLGRP-AFILSCEPDKA 126
Query: 226 SXXRXIQNGXF 258
S + I + F
Sbjct: 127 SKVKTIVDVTF 137
>AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 433
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 46 AGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRTSN*VNXFRTFXSRECTFFKKKKPD*H 225
AG+ N+ QHD L ST+ + SS +S + S F R F +PD
Sbjct: 96 AGMDANKFQHDRDLISTSTSESSDSSGSFSFSQRSKVPKSMANFLGRP-AFILSCEPDKA 154
Query: 226 SXXRXIQNGXF 258
S + I + F
Sbjct: 155 SKVKTIVDVTF 165
>AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform b protein.
Length = 284
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 46 AGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRTSN*VNXFRTFXSRECTFFKKKKPD*H 225
AG+ N+ QHD L ST+ + SS +S + S F R F +PD
Sbjct: 71 AGMDANKFQHDRDLISTSTSESSDSSGSFSFSQRSKVPKSMANFLGRP-AFILSCEPDKA 129
Query: 226 SXXRXIQNGXF 258
S + I + F
Sbjct: 130 SKVKTIVDVTF 140
>AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform a protein.
Length = 408
Score = 29.1 bits (62), Expect = 3.6
Identities = 21/71 (29%), Positives = 30/71 (42%)
Frame = +1
Query: 46 AGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRTSN*VNXFRTFXSRECTFFKKKKPD*H 225
AG+ N+ QHD L ST+ + SS +S + S F R F +PD
Sbjct: 71 AGMDANKFQHDRDLISTSTSESSDSSGSFSFSQRSKVPKSMANFLGRP-AFILSCEPDKA 129
Query: 226 SXXRXIQNGXF 258
S + I + F
Sbjct: 130 SKVKTIVDVTF 140
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 501 PPPXGEXTPXXPPPXXGGGXXPP 433
PPP G PPP GG PP
Sbjct: 75 PPPPGPGGIPPPPPMFAGGIPPP 97
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 503 PPPRXGKXPPXXPPLXXGGXXXPP 432
PPP G PP PP+ GG PP
Sbjct: 76 PPPGPGGIPPP-PPMFAGGIPPPP 98
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -2
Query: 503 PPPRXGKXPPXXPPLXXGGXXXPP 432
PPP G PP PP G PP
Sbjct: 107 PPPMFGAPPPPPPPSGLGVAPQPP 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,116,305
Number of Sequences: 27780
Number of extensions: 235930
Number of successful extensions: 1042
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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