Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_M16
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.56 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.98 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   6.9  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    25   9.2  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -2

Query: 337 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 239
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 14/48 (29%), Positives = 16/48 (33%)
 Frame = +2

Query: 467 PXXPLXXXTXPXPPPXNXXXPPFSPXXTPPXAXQXXPXXRXPXPPXRP 610
           P  P      P   P     PP SP   PP   +  P      PP +P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
 Frame = +2

Query: 497 PXPPPXNXXXPPFSPXXTPPXAXQ--XXPXXRXPXPP 601
           P PPP     PP +    PP   Q    P  + P PP
Sbjct: 206 PPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP 242


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 25/102 (24%), Positives = 29/102 (28%)
 Frame = +2

Query: 464 PPXXPLXXXTXPXPPPXNXXXPPFSPXXTPPXAXQXXPXXRXPXPPXRPXLXLXXXXXSX 643
           PP  P        PP  N       P  TPP      P    P  P  P L +       
Sbjct: 392 PPAIP-GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAP--PSLPM-----GA 443

Query: 644 PXXXXXXPXXXXXXPGRXGXPXXPHXPXGSXSPXGXPXXCPS 769
           P      P      P   G P  P  P  + +P   P   P+
Sbjct: 444 PAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPA 485


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/72 (26%), Positives = 21/72 (29%), Gaps = 1/72 (1%)
 Frame = +2

Query: 398 PSPPRXXLXPXXRXXXXAMXXXPPXXPLXXXTXPXPPPXNXXXP-PFSPXXTPPXAXQXX 574
           P PP   + P       A    PP  P+     P PPP       P  P   PP      
Sbjct: 733 PPPPPAVIVPTPAP---APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789

Query: 575 PXXRXPXPPXRP 610
                P P   P
Sbjct: 790 SRYYAPAPQAEP 801


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 328 PPPLRSLISNLSNTCDLTPLPEW 260
           P P+ S    ++N  +L PLPEW
Sbjct: 10  PKPMDSSHIKVTNVKELKPLPEW 32


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +2

Query: 386 RXDRPSPPRXXLXPXXRXXXXAMXXXPPXXPLXXXTXPXP 505
           R D+P   R  L    R    A    PP  P+   T P P
Sbjct: 236 RFDQPPSKRMALTSTARESVPAPLPSPPSGPIYTYTYPKP 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,977
Number of Sequences: 5004
Number of extensions: 15846
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)