Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_M09
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 34 0.14
06_03_0218 + 18219956-18220555 30 2.3
01_07_0346 + 42889121-42890406,42896115-42896118 29 3.0
04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042 29 4.0
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 29 5.2
01_06_0091 - 26363070-26363361,26363467-26363625,26363708-263638... 29 5.2
03_06_0031 + 31178063-31178323,31178975-31179093,31179182-311793... 28 6.9
11_01_0433 - 3323372-3324616,3324708-3324905 28 9.2
05_04_0099 - 17991569-17993014 28 9.2
04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505... 28 9.2
02_02_0349 + 9237537-9238334 28 9.2
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 33.9 bits (74), Expect = 0.14
Identities = 22/80 (27%), Positives = 35/80 (43%)
Frame = +1
Query: 376 PASPSRLDTDICHNIEMNAETAASGGLVAGGKAAAESRSRSTTGEHGAGRQRVCRGASPE 555
P +PS L + I H +AA+G A +++ S + S + G G SP
Sbjct: 57 PLTPSSLCSAI-HGHRAGVSSAAAGAAAAQSSSSSSSAAASASAGGGGGVAGAAAVDSPT 115
Query: 556 RHLEHXHASFHLATGPGSAP 615
+E+ HA+ H + S P
Sbjct: 116 SVIENHHAALHHSAELPSTP 135
>06_03_0218 + 18219956-18220555
Length = 199
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 424 MNAETAASGGLVAGGKAAAESRSRSTTGEHGAGRQRVCRG 543
+ A AA GG G + A R R TTG G G +RV G
Sbjct: 160 VEAAQAAGGGRQRGRERRATGRWRGTTGRLGRGLKRVNGG 199
>01_07_0346 + 42889121-42890406,42896115-42896118
Length = 429
Score = 29.5 bits (63), Expect = 3.0
Identities = 27/87 (31%), Positives = 37/87 (42%)
Frame = +1
Query: 376 PASPSRLDTDICHNIEMNAETAASGGLVAGGKAAAESRSRSTTGEHGAGRQRVCRGASPE 555
P SP++ D N+ M A+ L AGG++A S + T + R+R R A+
Sbjct: 98 PESPAQRWLDDVANLVMTAQQR----LGAGGRSATTKTSGAATTGSVSSRRRARRAAAVA 153
Query: 556 RHLEHXHASFHLATGPGSAPHWTEPSH 636
R H A P SAP E H
Sbjct: 154 R---------HSAATPSSAPPTREDQH 171
>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
Length = 360
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 430 AETAASGGLVAGGKAAAESRSRSTTGEHGAGRQ 528
AE + G GG AAA + +R+T +HGA Q
Sbjct: 325 AEGSEGGVAEGGGGAAAAAHARATATDHGAAPQ 357
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 421 EMNAETAASGGLVAGGKAAAESRSRSTTGEHGAGR--QRVCRGAS 549
+ + A++GG GG+ A S + ST+G G G+ + RGA+
Sbjct: 160 QADPSAASAGGGGGGGRKAGSSWADSTSGSRGKGKAAEHPARGAT 204
>01_06_0091 -
26363070-26363361,26363467-26363625,26363708-26363880,
26366639-26366810,26366912-26367294
Length = 392
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 484 SRSRSTTGEHGAGRQR 531
S R+TTG+HGAGR+R
Sbjct: 47 SPKRNTTGQHGAGRRR 62
>03_06_0031 +
31178063-31178323,31178975-31179093,31179182-31179368,
31179455-31179601,31179686-31179802,31180017-31180307
Length = 373
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 472 AAAESRSRSTTGEHGAGRQRV-CRGASPER 558
AAA +R +S +G HG+ RV C G SP R
Sbjct: 15 AAATARPQSRSGRHGSCAARVPCPGPSPFR 44
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 391 RLDTDICHN-IEMNAETAASGGLVAGGKAAAESRSR 495
+++T + N +EM E AA+ G GG AAA R R
Sbjct: 5 KVETIVAGNYVEMEREGAATAGEGVGGAAAASGRRR 40
>05_04_0099 - 17991569-17993014
Length = 481
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +1
Query: 457 VAGGKAAAESRSRSTTGEHGAGRQRVCRGASPERHLEHXHASFHLATGPGSAP-HWT 624
+AGG A + EH +RV R H HAS A G +AP W+
Sbjct: 17 LAGGAALRLELAHVDANEHCTMEERVRRATERTHHRRLLHASTAAAAGGVAAPLRWS 73
>04_04_0329 +
24449574-24449633,24450261-24450320,24450510-24450562,
24450913-24450973,24451481-24451666,24451877-24451984,
24452196-24453418,24453571-24454405
Length = 861
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 433 ETAASGGLVAGGKAAAESRSRSTTGEHGAGRQRVCR--GASPERH 561
+T A + GGK A+E +R +GE +C ASPE+H
Sbjct: 450 DTCAEDDIKDGGKVASEECTRQNSGE---APSEICEVDQASPEKH 491
>02_02_0349 + 9237537-9238334
Length = 265
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +1
Query: 445 SGGLVAGGKAAAESRSRSTTGEHGA---GRQR 531
SGGL GG A AE R GE A GR+R
Sbjct: 43 SGGLRTGGAALAEGRKEKRLGEKAAPHGGRKR 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,156,035
Number of Sequences: 37544
Number of extensions: 259644
Number of successful extensions: 1145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -