Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_M08
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798 31 0.90
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100... 31 0.90
10_08_0010 - 14078740-14079270 30 2.1
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 29 2.7
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331... 29 3.6
06_01_0845 - 6430419-6431195 29 3.6
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 3.6
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969... 29 4.8
03_03_0167 + 15041626-15043029 28 6.3
01_06_0475 + 29610268-29610711 28 6.3
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 28 8.4
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 28 8.4
>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
Length = 333
Score = 31.1 bits (67), Expect = 0.90
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -2
Query: 497 CFLICLL--AGARSHRTCSVIGTTSIKRHDTRTLSSWPPVTTFPILRTEWKAVDVAQNTS 324
C +IC G + ++ S+ TT+ HDT T +S PP+ P++ T + + NTS
Sbjct: 162 CRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPLP--PLMDTTLAQLQASMNTS 219
Query: 323 S 321
S
Sbjct: 220 S 220
>08_01_0125 +
1001397-1001865,1002743-1002810,1003359-1003490,
1003649-1003810,1003973-1004260
Length = 372
Score = 31.1 bits (67), Expect = 0.90
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -3
Query: 307 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 128
S NG R P SS +L +G L+L S F P SG+R RSGG
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256
Query: 127 LLGFVLATS-SGLSPVSSPTKVRV 59
G V+ +GL +SP ++ V
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQIVV 280
>10_08_0010 - 14078740-14079270
Length = 176
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 531 CVNFSSPTETCLLSYLLACWS 469
C+ S+PT C+L++L+A W+
Sbjct: 136 CIRGSTPTTVCILAHLVAAWA 156
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 665 EHXSSTHXHAXHRKNLHPPAEPEHRRIARHERTGR 561
EH SS H HR + H + EHR RH+R R
Sbjct: 784 EHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
>11_01_0432 +
3313060-3313107,3313610-3313753,3314510-3314662,
3315283-3315792,3315888-3317423,3317505-3317573,
3317742-3317807,3318517-3318640,3319464-3319690
Length = 958
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -3
Query: 247 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 77
L TKG +T+ H P+ FSP S G E+ L + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259
>06_01_0845 - 6430419-6431195
Length = 258
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -2
Query: 611 PAEPEHRRIARHERTGRLILQVTTTSDVSIFLPPRKLACFLI 486
PA P R +A + GRL+L + D PPR+ +CF I
Sbjct: 117 PAPPRGRVVAT-KAEGRLVLDLVERGDSPPPPPPRRRSCFSI 157
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 562 VLSYRSRRLQMCQFFFPHGNLLAFLFACLLEPEVIERVVL 443
+ +Y R ++CQ P N F F C PE I+R L
Sbjct: 235 IRTYLLERSRVCQINSPERNYHCFYFLCAAPPEDIKRYKL 274
>01_06_1202 +
35396165-35396260,35396398-35396549,35396694-35396938,
35397044-35398350
Length = 599
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -2
Query: 503 LACFLICLLAGARSHRTCSVIGTTSIKR----HDTRTLSSWPPVTTFPILRTEWKAVDVA 336
L+C ++ LLAGA H ++ T +KR H+ T++ P T + + ++V
Sbjct: 13 LSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVINVV 72
Query: 335 QNTSSRILL 309
+ + +
Sbjct: 73 NHAQYNVTI 81
>03_03_0167 + 15041626-15043029
Length = 467
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 554 LQVTTTSDVSIFLPPRKLACFLICLLAGARSHRTCSVIGTTSIKRHDTRTLSS 396
+++T V + LPP + A R H C ++ K D RTL++
Sbjct: 1 MELTPLLAVVLLLPPALAVAHMAWTAASRRRHTRCYLLDYVCYKPEDDRTLTA 53
>01_06_0475 + 29610268-29610711
Length = 147
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 271 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 182
SP SS+P S+++ TL HSP S SPD
Sbjct: 54 SPMSSSPP---SRSSTRATLTHSPSSASPD 80
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 532 SEVVVTCKIRRPVRS--CLAMRRC 597
S++ +TCKI RPVRS C RC
Sbjct: 398 SQLCITCKIVRPVRSKHCSTCDRC 421
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 532 SEVVVTCKIRRPVRS--CLAMRRC 597
S++ +TCKI RPVRS C RC
Sbjct: 363 SQLCITCKIVRPVRSKHCSTCDRC 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,488
Number of Sequences: 37544
Number of extensions: 379018
Number of successful extensions: 1125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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