Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_M07
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_03_0023 - 7151465-7152111,7152222-7152405                           30   1.6  
03_01_0389 + 3021849-3022136,3022237-3022753,3022835-3022988,302...    30   1.6  
12_02_1174 - 26696869-26698191                                         27   8.7  

>10_03_0023 - 7151465-7152111,7152222-7152405
          Length = 276

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 164 PPNQERAVNLSILP-VFPGPGXISRLSQLTXGPPWWXPSAIL*FHFGTIPPRXPKFLVSR 340
           PPN       S++P VFP P   S L  LT  PP   PS++       IPP  P  L++ 
Sbjct: 188 PPNPITPAPPSLVPPVFPTPSPPSILPPLTPQPP---PSSL-------IPPVLPLPLLNP 237

Query: 341 KLPPQP 358
             PP P
Sbjct: 238 PPPPPP 243


>03_01_0389 +
           3021849-3022136,3022237-3022753,3022835-3022988,
           3023076-3023166,3024556-3024627,3026366-3026689
          Length = 481

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 232 PVESINXRPPLVXPFRNPLISLWNHTPPXSKIFGFPETSP 351
           P+  +   PP   PF NP       TPP     GFPE +P
Sbjct: 236 PLAVVTAAPPPPPPFVNPATP---QTPPYGAPIGFPEIAP 272


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 22/89 (24%), Positives = 33/89 (37%)
 Frame = +1

Query: 118 PDKSLHQTKNGHAPPPTESRKSC*SVNPSGVPGAW*XFPVESINXRPPLVXPFRNPLISL 297
           P ++  + +  H PPP + +       P   P      P    + +PP+V P   P  SL
Sbjct: 128 PPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPP--PPPPRPPSVKPPVVQPKPQPPPSL 185

Query: 298 WNHTPPXSKIFGFPETSPPTXXNYPRGVP 384
              +PP       P   PP     P+  P
Sbjct: 186 QPPSPPPPPPTRPPSVKPPVVQPKPQPPP 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,524
Number of Sequences: 37544
Number of extensions: 320432
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)