Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_M07
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 depende...    29   3.4  

>AF099919-3|AAC68801.2|  862|Caenorhabditis elegans Hypothetical
           protein F40G9.9 protein.
          Length = 862

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 385 REPXXGNXKXLGGKFPGNQKFWXPGGYGSKV 293
           R P     + LG +FPG Q F  PG  G++V
Sbjct: 554 RVPGFQGFRVLGSRFPGFQGFRVPGFQGARV 584


>AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 dependent
           zygotic transcriptprotein 5 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 104 LPGINQTNRSTKLRTGMHHHPPNQERAVNLSILPVFPGPGXISRL 238
           L GI+ TN S +      H P N +  VN+    VF G   I R+
Sbjct: 158 LSGISYTNVSAQNILKFKHMPDNNKNYVNMEDFDVFEGGMNIKRI 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,783,779
Number of Sequences: 27780
Number of extensions: 246113
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)