Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_M04
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical pr...   129   2e-30
Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical pr...   129   2e-30
U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    31   0.70 
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    31   0.70 
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    30   1.6  
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme...    29   2.8  
AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical ...    29   3.7  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    28   6.6  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z35663-7|CAA84734.1|  328|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical p...    28   8.7  
Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical pr...    28   8.7  
L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein pr...    28   8.7  
AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical ...    28   8.7  
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ...    28   8.7  

>Z81103-2|CAB03213.1|  403|Caenorhabditis elegans Hypothetical
           protein M04G12.1b protein.
          Length = 403

 Score =  129 bits (312), Expect = 2e-30
 Identities = 57/85 (67%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
 Frame = -1

Query: 638 LFKCTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIKRQ-QGSEVYCPSGEKCPLANSTV 462
           + +CTLC ERLEDTHFVQCP+   HKFCFPCSR SIK Q + S++YCPSG+KCPL  S +
Sbjct: 268 VLRCTLCNERLEDTHFVQCPTVSIHKFCFPCSRSSIKDQCKSSDMYCPSGDKCPLVGSAM 327

Query: 461 PWAFMQGEIATIMGDELKP-KKERE 390
           PWAFMQGEIA I+GDE    K+ RE
Sbjct: 328 PWAFMQGEIAQILGDEYDEFKRTRE 352


>Z81103-1|CAB03208.2|  457|Caenorhabditis elegans Hypothetical
           protein M04G12.1a protein.
          Length = 457

 Score =  129 bits (312), Expect = 2e-30
 Identities = 57/85 (67%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
 Frame = -1

Query: 638 LFKCTLCQERLEDTHFVQCPSQPHHKFCFPCSRDSIKRQ-QGSEVYCPSGEKCPLANSTV 462
           + +CTLC ERLEDTHFVQCP+   HKFCFPCSR SIK Q + S++YCPSG+KCPL  S +
Sbjct: 295 VLRCTLCNERLEDTHFVQCPTVSIHKFCFPCSRSSIKDQCKSSDMYCPSGDKCPLVGSAM 354

Query: 461 PWAFMQGEIATIMGDELKP-KKERE 390
           PWAFMQGEIA I+GDE    K+ RE
Sbjct: 355 PWAFMQGEIAQILGDEYDEFKRTRE 379


>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 629 CTLCQERLEDTHFVQCPSQPHHKFCFPCS 543
           CT CQ +++D  F+    + +H+ C  CS
Sbjct: 98  CTQCQHQIQDKFFLSIDGRNYHENCLQCS 126


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 629 CTLCQERLEDTHFVQCPSQPHHKFCFPCS 543
           CT CQ +++D  F+    + +H+ C  CS
Sbjct: 98  CTQCQHQIQDKFFLSIDGRNYHENCLQCS 126


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -2

Query: 253 STVTISVRSTNLTIDSISLPDDRRNASWTSFGDSCARRASDDAPVMFRMK 104
           ST+T  ++S N ++DS + PD   N         C RR    +P + RM+
Sbjct: 25  STMTTPLQSPNFSLDSPNYPDSLSNGGGKDDKKKC-RRYKTPSPQLLRMR 73


>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
            protein 1 protein.
          Length = 1425

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 655  HPHPHRYSNA-PCARNAWKIRISCSAPANRTISSVSPAPGTRS 530
            H H    SNA   AR   K+ +      NRT SS SP P  +S
Sbjct: 999  HVHSQTVSNALSTAREEKKLHLKIDHARNRTFSSSSPVPDGQS 1041


>AF016427-1|AAB65351.1|  594|Caenorhabditis elegans Hypothetical
           protein F32D1.1 protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 98  RELHSEHYGSVVGRPPRTRITKRSPRCISPIVGK*NRIDRE 220
           R+  S+  GS+ G PP  R      RC +P++ K   +D E
Sbjct: 234 RQSSSQSIGSLAGIPPARRAPDIPKRCSNPLIRKAMGMDTE 274


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 23/84 (27%), Positives = 40/84 (47%)
 Frame = +3

Query: 201  EIESIVRFVERTDIVTVDYLQCYIQDVRRCSAAEPPGGLVPRLSSREREGRQIQSA*PGA 380
            E    +RFV+  + +T    + ++Q    CS+  PPGGL   L  R    R+++S   G+
Sbjct: 2667 ESPGFLRFVDVMEALTAQERKNFLQFATGCSSL-PPGGLA-NLHPRLTIVRKVESG-DGS 2723

Query: 381  ALSLAFLLRFQFVSHYRSNFTLHE 452
              S+   + +  +  Y S+  L E
Sbjct: 2724 YPSVNTCVHYLKLPEYSSSAILRE 2747


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 103 TSFGTLRERRRTPAAHKNHQTKSTMHFADRREVKSN 210
           TSFG  R +     AH+ HQT +  H ++     S+
Sbjct: 220 TSFGMSRSKSMGSVAHEAHQTSNNQHSSETHGTASS 255


>Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical
           protein F01D4.6a protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -1

Query: 632 KCTLCQERLEDTHFVQCPSQPHHKFCFPCS 543
           KC  C E++ D +  +  ++ +H+ C  C+
Sbjct: 28  KCNCCNEQIYDRYIYRMDNRSYHENCVKCT 57


>Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical
           protein F07C6.1 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -1

Query: 638 LFKCTLCQERLEDTHFVQCPSQPHHKFCFPCSR-----DSIKRQQGSEVYCP 498
           ++ C  C++ ++++  +     P+H + F C+      +S  R    +++CP
Sbjct: 140 IYNCNKCKQHVDNSDLLTYQENPYHAYHFKCTTCKKVLESDARTIKDDLFCP 191


>Z35663-7|CAA84734.1|  328|Caenorhabditis elegans Hypothetical
           protein T04A8.8 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 559 NLWCGWLGHCTKCVSSKRSWHKVHLNNGADADAGTSGPSP 678
           N +  +LG+    +  KR   +V  ++ +D D  TSGPSP
Sbjct: 7   NAYSDYLGNRRAALQKKRQPVRVCESDDSDDDFDTSGPSP 46


>Z22177-12|CAA80152.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -1

Query: 659 PASASAPLFKCTLCQERLEDTHFVQCPSQPHHKFCFPC 546
           P      L  C +C +R +    + C     H FC+PC
Sbjct: 33  PLEKIEQLLTCPICLDRYKQPKLLPC----QHTFCYPC 66


>Z19155-5|CAA79562.1|  974|Caenorhabditis elegans Hypothetical
           protein F54G8.4 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -1

Query: 659 PASASAPLFKCTLCQERLEDTHFVQCPSQPHHKFCFPC 546
           P      L  C +C +R +    + C     H FC+PC
Sbjct: 33  PLEKIEQLLTCPICLDRYKQPKLLPC----QHTFCYPC 66


>L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein
           protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -1

Query: 632 KCTLCQERLEDTHFVQCPSQPHHKFCFPCS 543
           KC  C E++ D +  +  ++ +H+ C  C+
Sbjct: 28  KCNCCNEQIYDRYIYRMDNRSYHENCVKCT 57


>AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical
           protein Y75B8A.7 protein.
          Length = 648

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 111 RNITGASSDARRAQESPNEVHDAFRRSSG 197
           +N TG S+D       PNE H+A +   G
Sbjct: 454 QNSTGNSADGAAGATKPNEAHEAIKSKMG 482


>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
           protein Y67D8A.1 protein.
          Length = 1020

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 524 QQGSEVYCPSGEKCPLANSTVPWAFMQGEIATIMGDELKPKKERET*SGT 375
           Q+  ++Y    +KC +A+ TVP  ++  E   +  DE    KERE  + T
Sbjct: 142 QEYGDIYFKKLQKCLVADETVPGGYIVPECYCV--DEFIMDKEREQPNST 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,823
Number of Sequences: 27780
Number of extensions: 399423
Number of successful extensions: 1323
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)