Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_L17
         (1083 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    26   1.7  
AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase assoc...    26   1.8  
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr...    24   7.9  

>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
            protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 26.2 bits (55), Expect(2) = 1.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 666  GTPPPPPPXXXXFF 707
            G PPPPPP    FF
Sbjct: 1011 GPPPPPPPPPADFF 1024



 Score = 23.0 bits (47), Expect(2) = 1.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 645  PXXXXXXGTPPPPPP 689
            P      G PPPPPP
Sbjct: 1003 PKAPAGPGGPPPPPP 1017


>AC006638-1|AAK85482.1|  495|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform b protein.
          Length = 495

 Score = 26.2 bits (55), Expect(2) = 1.8
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 666 GTPPPPPPXXXXFF 707
           G PPPPPP    FF
Sbjct: 250 GPPPPPPPPPADFF 263



 Score = 23.0 bits (47), Expect(2) = 1.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 645 PXXXXXXGTPPPPPP 689
           P      G PPPPPP
Sbjct: 242 PKAPAGPGGPPPPPP 256


>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
           protein F15B9.4 protein.
          Length = 1140

 Score = 23.8 bits (49), Expect(2) = 7.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 666 GTPPPPPPXXXXF 704
           G PPPPPP    F
Sbjct: 575 GPPPPPPPPPPSF 587



 Score = 23.0 bits (47), Expect(2) = 7.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 645 PXXXXXXGTPPPPPP 689
           P      G PPPPPP
Sbjct: 542 PPVGMANGGPPPPPP 556


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,347
Number of Sequences: 27780
Number of extensions: 190945
Number of successful extensions: 6702
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2521
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2908502164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)