Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_L07
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   305   5e-83
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   305   5e-83
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   305   5e-83
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   305   5e-83
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   305   5e-83
AE014297-3352|AAF56159.2|  350|Drosophila melanogaster CG16710-P...    30   3.5  

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  305 bits (748), Expect = 5e-83
 Identities = 142/172 (82%), Positives = 153/172 (88%)
 Frame = -1

Query: 664 QDEMIDCIGVTQGQRIQRCHXSLAHKEATPRKTHKGLRKVACIGAWHPSRVSFTVARAGQ 485
           QDEMIDC+GVT+G+  +    S  H +  PRKTHKGLRKVACIGAWHPSRVS TVARAGQ
Sbjct: 224 QDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQ 282

Query: 484 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 305
           KGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFV
Sbjct: 283 KGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFV 342

Query: 304 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 149
           MIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 343 MIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 394



 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 144 KAAFMGTLKKDRIREE 97
           K AFMG LKKDR++EE
Sbjct: 396 KLAFMGPLKKDRLKEE 411


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  305 bits (748), Expect = 5e-83
 Identities = 142/172 (82%), Positives = 153/172 (88%)
 Frame = -1

Query: 664 QDEMIDCIGVTQGQRIQRCHXSLAHKEATPRKTHKGLRKVACIGAWHPSRVSFTVARAGQ 485
           QDEMIDC+GVT+G+  +    S  H +  PRKTHKGLRKVACIGAWHPSRVS TVARAGQ
Sbjct: 213 QDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQ 271

Query: 484 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 305
           KGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFV
Sbjct: 272 KGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFV 331

Query: 304 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 149
           MIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 332 MIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 383



 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 144 KAAFMGTLKKDRIREE 97
           K AFMG LKKDR++EE
Sbjct: 385 KLAFMGPLKKDRLKEE 400


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  305 bits (748), Expect = 5e-83
 Identities = 142/172 (82%), Positives = 153/172 (88%)
 Frame = -1

Query: 664 QDEMIDCIGVTQGQRIQRCHXSLAHKEATPRKTHKGLRKVACIGAWHPSRVSFTVARAGQ 485
           QDEMIDC+GVT+G+  +    S  H +  PRKTHKGLRKVACIGAWHPSRVS TVARAGQ
Sbjct: 200 QDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQ 258

Query: 484 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 305
           KGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFV
Sbjct: 259 KGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFV 318

Query: 304 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 149
           MIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 319 MIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 370



 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 144 KAAFMGTLKKDRIREE 97
           K AFMG LKKDR++EE
Sbjct: 372 KLAFMGPLKKDRLKEE 387


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  305 bits (748), Expect = 5e-83
 Identities = 142/172 (82%), Positives = 153/172 (88%)
 Frame = -1

Query: 664 QDEMIDCIGVTQGQRIQRCHXSLAHKEATPRKTHKGLRKVACIGAWHPSRVSFTVARAGQ 485
           QDEMIDC+GVT+G+  +    S  H +  PRKTHKGLRKVACIGAWHPSRVS TVARAGQ
Sbjct: 200 QDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQ 258

Query: 484 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 305
           KGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFV
Sbjct: 259 KGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFV 318

Query: 304 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 149
           MIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 319 MIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 370



 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 144 KAAFMGTLKKDRIREE 97
           K AFMG LKKDR++EE
Sbjct: 372 KLAFMGPLKKDRLKEE 387


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  305 bits (748), Expect = 5e-83
 Identities = 142/172 (82%), Positives = 153/172 (88%)
 Frame = -1

Query: 664 QDEMIDCIGVTQGQRIQRCHXSLAHKEATPRKTHKGLRKVACIGAWHPSRVSFTVARAGQ 485
           QDEMIDC+GVT+G+  +    S  H +  PRKTHKGLRKVACIGAWHPSRVS TVARAGQ
Sbjct: 213 QDEMIDCVGVTKGKGFKGV-TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQ 271

Query: 484 KGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFV 305
           KGYHHRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFV
Sbjct: 272 KGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFV 331

Query: 304 MIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 149
           MIKGCC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPA
Sbjct: 332 MIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPA 383



 Score = 29.5 bits (63), Expect = 4.6
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 144 KAAFMGTLKKDRIREE 97
           K AFMG LKKDR++EE
Sbjct: 385 KLAFMGPLKKDRLKEE 400


>AE014297-3352|AAF56159.2|  350|Drosophila melanogaster CG16710-PA
           protein.
          Length = 350

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 22  ALSNVYFHGRHLRLRSSRWGCGSRSFFANTILLECTH-----ECSLXQPASGIDHD 174
           AL  + F  R+ +L+ + WG   +  ++N +L    +     ECSL +P+ G+D +
Sbjct: 221 ALLRLKFPVRNHKLQIAGWGLSHKQGYSNVLLQAYVNGRNADECSLSEPSLGLDKE 276


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,064,050
Number of Sequences: 53049
Number of extensions: 699726
Number of successful extensions: 1652
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)