Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_L05
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.61 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.6  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    25   10.0 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = -1

Query: 675 VXXGPPPXPXXXXXXGGGGGXXXXXPPPPPP 583
           +  GPPP P      G G       PPPPPP
Sbjct: 757 IMGGPPPPPPPPGVAGAG----PPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 393 PXXGGTPPPPPXVXXXXGGXP 455
           P  GG PPPPP       G P
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPP 776



 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 652 PPXXXXXGGGGGXXXXXPPPPPP 584
           PP      G  G     PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/31 (38%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
 Frame = -1

Query: 663 PPPXPXXXXXX----GGGGGXXXXXPPPPPP 583
           PPP P          G G       PPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -1

Query: 75  SSGRFRYPSRGPSLRV 28
           +SGRFR P+R PS RV
Sbjct: 205 NSGRFRDPARDPSDRV 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,735,183
Number of Sequences: 5004
Number of extensions: 22229
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)