Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_L03
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    57   2e-09
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    54   3e-08
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    29   0.99 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.3  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    25   9.2  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 27/44 (61%), Positives = 35/44 (79%)
 Frame = -3

Query: 474 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP*PLKKVKR 343
           SIGL+W+LLAREVLR+RG L R   WDV+ DL+FY  P ++V+R
Sbjct: 172 SIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP-EEVER 214



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 37/113 (32%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
 Frame = -2

Query: 724 FPANTGVTLFXGRLTPGGFX*PXSKXAFPGTLXF*FYWTXAQDH*TPLLKLHMSTFPVIA 545
           F A+TG T   GR TPG F    ++      L      T  +     + +      PVIA
Sbjct: 92  FAAHTGATAIAGRFTPGNFTNYITRTYREPRL---IVVTDPRADAQAIKEASFVNIPVIA 148

Query: 544 LCNTNSPXRXVDIXIPCNT---QVFPLYWF----DVV-VVGT*SVEASWCASP 410
           LC+T+S    VDI IP N    +   L W+    +V+ V GT S  A W   P
Sbjct: 149 LCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMP 201


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = -3

Query: 474 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP*P 361
           SIGL W+LLAREVLRLRG + R   W+V+ DL+FY  P
Sbjct: 173 SIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 26/80 (32%), Positives = 36/80 (45%)
 Frame = -2

Query: 724 FPANTGVTLFXGRLTPGGFX*PXSKXAFPGTLXF*FYWTXAQDH*TPLLKLHMSTFPVIA 545
           F A+TG T   GR TPG F    ++      L      T  +     + +      PVIA
Sbjct: 93  FAAHTGATAIAGRFTPGNFTNYITRTYREPRLII---VTDPRADAQAIKEASFVNIPVIA 149

Query: 544 LCNTNSPXRXVDIXIPCNTQ 485
           LC+T+S    VD+ IP N +
Sbjct: 150 LCDTDSILNHVDVAIPINNK 169


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 383 STTTSQRWSRGSTPRSLNTSRANNHHIKPIEWENLG 490
           S   S RW  G+T  S     A++  I PIEWE +G
Sbjct: 439 SNNISVRWFLGAT--SAQNRNASSEAILPIEWEAVG 472


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 471 IGLMWWLLAREVLRLRGVLPRDQRWD 394
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 462 MWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP 367
           +WW L+R+  R    L R  +W  V     YP
Sbjct: 68  IWWSLSRKATRFYRWLSRSLKWRPVTYETVYP 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,974
Number of Sequences: 5004
Number of extensions: 49945
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)