Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_L03
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 54 2e-07
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 53 2e-07
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.1
01_06_0867 - 32586254-32586574,32586756-32587172 29 4.1
06_03_0543 + 21967787-21970261 29 5.5
01_05_0535 - 23001864-23005052 29 5.5
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.2
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78... 28 7.2
01_05_0564 + 23312419-23312987,23314652-23314751,23314832-233150... 28 9.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/56 (44%), Positives = 36/56 (64%)
Frame = -3
Query: 495 ATPKFSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP*PLKKVKRMNNKP 328
A K +SIG ++WLLAR VL++RG + +WDV+VDLFFY P + ++ P
Sbjct: 167 ANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAP 222
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/80 (33%), Positives = 33/80 (41%)
Frame = -2
Query: 724 FPANTGVTLFXGRLTPGGFX*PXSKXAFPGTLXF*FYWTXAQDH*TPLLKLHMSTFPVIA 545
F TG GR TPG F L DH P+ + + P IA
Sbjct: 94 FAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLI--LTDPRTDH-QPIKESALGNIPTIA 150
Query: 544 LCNTNSPXRXVDIXIPCNTQ 485
C+T+SP R VDI IP N +
Sbjct: 151 FCDTDSPMRYVDIGIPANNK 170
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = -3
Query: 495 ATPKFSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYP*P 361
A K SIG ++WLLAR VL++RG + +WDV+VDLFFY P
Sbjct: 167 ANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/80 (33%), Positives = 33/80 (41%)
Frame = -2
Query: 724 FPANTGVTLFXGRLTPGGFX*PXSKXAFPGTLXF*FYWTXAQDH*TPLLKLHMSTFPVIA 545
F TG GR TPG F L DH P+ + + P IA
Sbjct: 94 FAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLI--LTDPRTDH-QPIKESALGNIPTIA 150
Query: 544 LCNTNSPXRXVDIXIPCNTQ 485
C+T+SP R VDI IP N +
Sbjct: 151 FCDTDSPMRYVDIGIPANNK 170
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 212 TRCSSCFWSTPCSRRMVCPGTR*VEHN 132
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -1
Query: 212 TRCSSCFWSTPCSRRMVCPGTR 147
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>01_06_0867 - 32586254-32586574,32586756-32587172
Length = 245
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 340 HPFHFLQG--SRVEEQINHNIPALVTGKHTTKPQHFTCQQPPH 462
H LQG S +E Q+ + AL + T PQHF QP H
Sbjct: 138 HQVSLLQGQLSVLESQLFNLRVALASAHPDTPPQHFVVLQPAH 180
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 465 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 376
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>01_05_0535 - 23001864-23005052
Length = 1062
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -3
Query: 441 EVLRLRGVLPRDQRWDVVVDLFFYP*PLKKV----KRMNNKPGNRLW 313
E++ G+LPR + + V+DL L K+ KRM KP +W
Sbjct: 813 ELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIW 859
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 212 TRCSSCFWSTPCSRRMVCPGTR*VEHN 132
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>02_01_0107 +
785993-786359,786773-787703,787807-787975,788472-788588,
788815-788961
Length = 576
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +2
Query: 416 STPRSLNTSRANNHHIKPIEWENLGVAWDXNVHXSXWGVCVAQSNHRK 559
S S++ + + H +P + +++G+AW+ + + W V++S HR+
Sbjct: 224 SETNSISDKQGDEEH-QPAK-KDVGIAWEDDENNEGWLPAVSRSTHRR 269
>01_05_0564 +
23312419-23312987,23314652-23314751,23314832-23315055,
23315212-23316041,23316161-23316275,23316786-23316905,
23317410-23317450,23317546-23317595,23317684-23317719,
23317836-23317856
Length = 701
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 356 FRGHG*KNKSTTTSQRWSRGSTPRSLNTSRANNHHIKP 469
FRG G ++ T ++RG R N NNH +P
Sbjct: 232 FRGRGGGGRTRGTGHGFARGGKYRGYNEDINNNHQNRP 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,388,240
Number of Sequences: 37544
Number of extensions: 342509
Number of successful extensions: 889
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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