Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_K14
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0768 - 19396146-19396607,19397855-19398175,19398424-193995...    31   0.96 
06_01_0906 + 6990892-6991615,6992480-6992679,6992822-6993002,699...    30   1.7  
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272     28   9.0  
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           28   9.0  

>04_03_0768 -
           19396146-19396607,19397855-19398175,19398424-19399569,
           19400073-19400855,19402114-19402149
          Length = 915

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 215 GTLGFLPGLPRGVTAPVAFLGLRPRFRGTVAP 310
           G  GF+PG+P G+  P+  LG++   +  ++P
Sbjct: 201 GPYGFMPGMPNGMLDPIHPLGMQGPIQPAISP 232


>06_01_0906 +
           6990892-6991615,6992480-6992679,6992822-6993002,
           6993855-6994046,6994492-6994724,6995537-6995638,
           6995776-6995826,6996234-6996338,6997287-6997353,
           6997946-6997962
          Length = 623

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/65 (29%), Positives = 24/65 (36%)
 Frame = -2

Query: 450 MGSEENTNTSATSDYVSKRPGRTPKXXXXXXXXXXXXXXXXXXXXXEGATVPRKRGRKPK 271
           M + E  +TS+      +RPGR PK                       +   RKRGRKPK
Sbjct: 1   MDNHELASTSSPKRKPGRRPGRKPKPPPAPSPAAAPAPAAENGTHDPASGQKRKRGRKPK 60

Query: 270 NATGA 256
               A
Sbjct: 61  PPAAA 65


>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
          Length = 786

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 177 SSEEEQEGSAVNSDSDAEFEQMLAEAEETK 88
           +S+E+    +  SDSD EFE +  + EETK
Sbjct: 605 ASKEDAVVCSSESDSDDEFEALTLQLEETK 634


>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 603 TTYKLFQQHVXPMLVKENPKVPVSKLMMLVAAKWR 499
           +++ LF +     L +E P V  S L  LV+ KW+
Sbjct: 419 SSFLLFSKEARRQLAEERPGVASSTLTALVSVKWK 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,864,438
Number of Sequences: 37544
Number of extensions: 214199
Number of successful extensions: 588
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)