Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_K11
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.69 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 499 PPPPXXXKXPPPPPPP 452
           PPP      PPPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPP 767



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 499 PPPPXXXKXPPPPPPP 452
           PP P     PPPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPP 768



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 501 PPPPXXXKKXPPPPPP 454
           PPPP      PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPP 780



 Score = 29.5 bits (63), Expect = 0.69
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 499 PPPPXXXKXPPPPPPP 452
           PPP      PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 499 PPPPXXXKXPPPPPPP 452
           PPPP       PPPPP
Sbjct: 764 PPPPPGVAGAGPPPPP 779


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = -3

Query: 499 PPPPXXXKXP--PPPPPP 452
           PPPP   + P  PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -1

Query: 501 PPPPXXXKKXPPPPPPXXXXXXKKXXK 421
           PPPP       PPPPP      K+  K
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
 Frame = -3

Query: 499 PPPPXXXKXPP--PPPPP 452
           PPPP     PP  PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 5/21 (23%)
 Frame = -3

Query: 499 PPPPXX-----XKXPPPPPPP 452
           PPPP          PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 499 PPPPXXXKXPPPPPP 455
           P PP     PPPPPP
Sbjct: 352 PLPPQGRSAPPPPPP 366



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 480 KKXPPPPPPXXXXXXKKXXKGGG 412
           KK PPPPPP       K   G G
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNG 330


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 499  PPPPXXXKXPPPPPPP 452
            PPPP     PPP  PP
Sbjct: 1707 PPPPPMSVPPPPSAPP 1722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,898
Number of Sequences: 5004
Number of extensions: 19607
Number of successful extensions: 261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)