Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_K05
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    34   0.11 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    34   0.11 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    34   0.11 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   2.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   2.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   2.4  
AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    28   5.6  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    28   5.6  
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/69 (28%), Positives = 21/69 (30%)
 Frame = -3

Query: 571 GXKXXXGXFFPPXXRXXGGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPPXX 392
           G     G   PP     G   P   G  PP         P  G PP  +    P PPP  
Sbjct: 245 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 304

Query: 391 KKPXRGKXP 365
             P  G  P
Sbjct: 305 GSPPTGSLP 313


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/69 (28%), Positives = 21/69 (30%)
 Frame = -3

Query: 571 GXKXXXGXFFPPXXRXXGGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPPXX 392
           G     G   PP     G   P   G  PP         P  G PP  +    P PPP  
Sbjct: 266 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 325

Query: 391 KKPXRGKXP 365
             P  G  P
Sbjct: 326 GSPPTGSLP 334


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 20/69 (28%), Positives = 21/69 (30%)
 Frame = -3

Query: 571 GXKXXXGXFFPPXXRXXGGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPPXX 392
           G     G   PP     G   P   G  PP         P  G PP  +    P PPP  
Sbjct: 251 GSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPR 310

Query: 391 KKPXRGKXP 365
             P  G  P
Sbjct: 311 GSPPTGSLP 319


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
 Frame = -3

Query: 520 GGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPP-XXKKPXRGKXPNXLRXEP 344
           G   P   G  PP  G      P  G PP       P PPP     P     P   +  P
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784

Query: 343 P 341
           P
Sbjct: 785 P 785


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
 Frame = -3

Query: 520 GGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPP-XXKKPXRGKXPNXLRXEP 344
           G   P   G  PP  G      P  G PP       P PPP     P     P   +  P
Sbjct: 725 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 784

Query: 343 P 341
           P
Sbjct: 785 P 785


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
 Frame = -3

Query: 520 GGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPP-XXKKPXRGKXPNXLRXEP 344
           G   P   G  PP  G      P  G PP       P PPP     P     P   +  P
Sbjct: 308 GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGP 367

Query: 343 P 341
           P
Sbjct: 368 P 368


>AF039052-9|AAF98625.1|  302|Caenorhabditis elegans Hypothetical
           protein T22D1.2 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/70 (28%), Positives = 25/70 (35%)
 Frame = -3

Query: 541 PPXXRXXGGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPPXXKKPXRGKXPN 362
           PP  +  G  TP   G      G   + N  +  PP  K   +P PPP  +        N
Sbjct: 221 PPPPKGTGSPTPPPTGEPQDLSG---EGNASRRPPPPPKGTGSPPPPPTGEPQDLSGEGN 277

Query: 361 XLRXEPPLXK 332
             R  PP  K
Sbjct: 278 ASRRPPPPPK 287



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/70 (28%), Positives = 24/70 (34%)
 Frame = -3

Query: 541 PPXXRXXGGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPPXXKKPXRGKXPN 362
           PP  +  G   P   G   P      + N  +  PP  K   TP PPP  +        N
Sbjct: 65  PPPPKGTGTPPPPPTG--EPQDLSAEEGNASRRPPPPPKGTGTPPPPPTGEPQDLSGEGN 122

Query: 361 XLRXEPPLXK 332
             R  PP  K
Sbjct: 123 ASRRPPPPPK 132


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 541 PPXXRXXGGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPPXXKKPXRGKXP 365
           P   +  GG  P    + PP G       PQ+ RPP+ +    P PPP  ++   G  P
Sbjct: 684 PQGQQYYGGPPPPGQPYGPPGGYP-----PQQQRPPY-QAQPYPGPPPPQQQRGYGYPP 736


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 541 PPXXRXXGGXTPXXXGFFPPXGGXXXKKNPQKGRPPFXKFXXTPXPPPXXKKPXRGKXP 365
           P   +  GG  P    + PP G       PQ+ RPP+ +    P PPP  ++   G  P
Sbjct: 684 PQGQQYYGGPPPPGQPYGPPGGYP-----PQQQRPPY-QAQPYPGPPPPQQQRGYGYPP 736


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 320 FFSXFXKGGFXP*XVWXFXPXGFFXXGGXGGG 415
           FF  + + G+ P   W F P  FF  GG  GG
Sbjct: 13  FFETYAQWGWGPPSPWGFRPSPFF--GGRSGG 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,829,721
Number of Sequences: 27780
Number of extensions: 171893
Number of successful extensions: 393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)