Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_K03
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   111   4e-25
AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    28   8.4  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  111 bits (268), Expect = 4e-25
 Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
 Frame = -3

Query: 753 GPLKIFXKDQXXIGPFXXXPRVXXLNVNKXTFLKLXPGGHXGRXVIWTQSAFGRLDPLFG 574
           GP+ I+ +D      F   P V  +NV +   LKL PGGH GR +IWT+SAF +LD ++G
Sbjct: 205 GPVVIYGQDAECARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYG 264

Query: 573 SWKTPSKQ-KKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPNKRVIRATRKLNPLTNNKA 397
           +    S Q KK +++P P MAN+D +R+ +S+E+ K +RAP K  +      NPL     
Sbjct: 265 TTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTL 324

Query: 396 MLKLNPY 376
           + KLNPY
Sbjct: 325 LYKLNPY 331


>AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical
           protein B0041.6b protein.
          Length = 137

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = -3

Query: 672 NKXTFLKLXPGGHXGRXVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRL 493
           NK TF K       G   +W     G +DP  G     +K KK  +L    +   D   L
Sbjct: 28  NKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVYDLAKLKKEMSL---VLDTVDHRNL 84

Query: 492 XKSDEIRKVLRAPNKRV-IRATRKLNPLTNNKAML 391
            K  E  K   + ++ V I    KL  + +N ++L
Sbjct: 85  DKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVL 119


>AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical
           protein B0041.6a protein.
          Length = 140

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
 Frame = -3

Query: 672 NKXTFLKLXPGGHXGRXVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRL 493
           NK TF K       G   +W     G +DP  G     +K KK  +L    +   D   L
Sbjct: 31  NKETFGKCNNSNGHGHNYVWKVKLRGEVDPTSGMVYDLAKLKKEMSL---VLDTVDHRNL 87

Query: 492 XKSDEIRKVLRAPNKRV-IRATRKLNPLTNNKAML 391
            K  E  K   + ++ V I    KL  + +N ++L
Sbjct: 88  DKDVEFFKTTVSTSENVAIYMFEKLKSVMSNPSVL 122


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -1

Query: 605 PHSAGLTPYSX---HGRHHRNKRRTSTCPSQRWPTLTSHVXSSLMRSGRSSVLPTNA*SV 435
           P+S   TP S     G+ HR     S      +PT+     SS+M S  S  LP+ + S 
Sbjct: 540 PYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIRLPSTSFSN 599

Query: 434 LHAN*TRSPIT 402
            + N +   +T
Sbjct: 600 QYPNNSTCSLT 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,717,021
Number of Sequences: 27780
Number of extensions: 191912
Number of successful extensions: 421
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)