Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_K02
         (1036 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.15 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.35 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.3  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    26   10.0 

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +2

Query: 692  PPHPXSXPPXPPAXHXXXXPXTPXXXPXXPXXNPPPPXXPXXP 820
            P HP S PP  P          P   P  P   PPPP  P  P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAP-TPPPPPMSVPPPPSAPPMP 1724



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +2

Query: 692  PPHPXSXPPXPPAXHXXXXPXTPXXXPXXPXXNPPPP 802
            PP   +  P PP       P  P   P  P   PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPM-PAGPPSAPPPP 1734


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.35
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -2

Query: 810 GXXGGGGFXXGXFGXXXGVYGXXXXXXAGGXGGXDXGWGGF 688
           G  GG G   G F    G +G       GG GG   G GGF
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGF 261



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
 Frame = -2

Query: 819 GXXGXXGGGGFXXGX---FGXXXGVYGXXXXXXAGGXGGXDXGWGGF 688
           G  G  GG G   G    FG   G +        GG GG   G GGF
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254



 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -2

Query: 801 GGGGFXXGXFGXXXGVYGXXXXXXAGGXGGXDXGWGGF 688
           G GGF  G  G   G  G       GG G    G GGF
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGF 226


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
 Frame = +2

Query: 695 PHPXSXP-PXPPAXHXXXXPXTPXXXPXXPXXNPPPPXXP 811
           P P   P P PP       P  P   P      PPPP  P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/41 (36%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
 Frame = +2

Query: 692 PPHPXSXP----PXPPAXHXXXXPXTPXXXPXXPXXNPPPP 802
           PP P S P    P  P       P  P   P  P   PPPP
Sbjct: 165 PPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205



 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +2

Query: 692 PPHPXSXPPXPPAXHXXXXPXTPXXXPXXPXXNPP 796
           PP P S PP P           P   P  P  +PP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185



 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +2

Query: 692 PPHPXSXPPXPPAXHXXXXPXTPXXXPXXPXXNPPPPXXPXXP 820
           PP P   PP P +      P  P   P  P  + PPP  P  P
Sbjct: 144 PPRPSIPPPSPASA-----PPIPSKAPPIPS-SLPPPAQPAAP 180


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +2

Query: 668 GGSXIXQKPPHPXSXPPXPPAXHXXXXPXTPXXXPXXPXXNPP-PPXXPXXP 820
           G +     PP P + P  PP+      P  P   P      PP PP  P  P
Sbjct: 407 GNASRTSTPPVP-TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 16/43 (37%), Positives = 17/43 (39%)
 Frame = -2

Query: 819 GXXGXXGGGGFXXGXFGXXXGVYGXXXXXXAGGXGGXDXGWGG 691
           G  G  G GGF  G  G   G  G       GG  G   G+GG
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRG---GFGG 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,477
Number of Sequences: 5004
Number of extensions: 16135
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)