Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_J21
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 30 2.6
08_02_1597 + 28128956-28129095,28129115-28129562 29 3.4
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 29 4.5
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333... 29 4.5
03_05_0958 - 29200048-29200731 29 4.5
02_05_0350 - 28179063-28179584,28179674-28180041,28180179-281802... 29 4.5
02_05_0040 + 25341418-25341810 29 4.5
12_02_0954 - 24757417-24758214 29 6.0
11_01_0763 + 6402901-6403971,6404581-6404826 29 6.0
07_03_0658 - 20366559-20367562,20367745-20367937 29 6.0
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 6.0
01_01_0198 + 1718374-1718875,1719591-1719604 28 7.9
>02_02_0279 -
8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -3
Query: 745 WAVRRVRWEVYISRARLVNRQIAWRRHPRC 656
W RRVRW R R R WRR PRC
Sbjct: 111 WRERRVRWRRPAWRERRGRR---WRRRPRC 137
>08_02_1597 + 28128956-28129095,28129115-28129562
Length = 195
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = -3
Query: 745 WAVRRVRWEVYISRARLVNRQIAWRRHPRC 656
W RRVRW R R RQ WRR PRC
Sbjct: 131 WRERRVRWRRPAWRERR-GRQ--WRRRPRC 157
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 535 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 425
Y+TSL + G ++ G+PR C AG D L W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320
>06_03_0108 -
16732215-16732572,16732623-16732741,16733344-16733393,
16734619-16734820
Length = 242
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 604 RLESGGWIGPGVFYGGQNSVDGVSRRSDGS 693
R SGG GP V YGG+ GV R+ D S
Sbjct: 140 RRGSGG-TGPAVDYGGRGDSGGVRRKEDSS 168
>03_05_0958 - 29200048-29200731
Length = 227
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1
Query: 580 KLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDG 690
+L+ R R +SGG G G G +S DG S+ SDG
Sbjct: 150 RLIEYVRSRNKSGGGGGGGGVAAGCSSSDGDSKSSDG 186
>02_05_0350 -
28179063-28179584,28179674-28180041,28180179-28180270,
28180366-28180412
Length = 342
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +1
Query: 580 KLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDGSLNELCLYRPPTVHALPPICVMG 759
K + +PRP++ +G + P V++ G++RR+ S + + PP L + +
Sbjct: 23 KEMDLPRPQMFAG--VSPEVYFPS-GGASGINRRNKRSREAIAMAPPPAKEELVNLFTLQ 79
Query: 760 AEVVTTF 780
+ T+F
Sbjct: 80 PQQSTSF 86
>02_05_0040 + 25341418-25341810
Length = 130
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +2
Query: 113 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 211
RRAAP CG S+ S +RR AP S P
Sbjct: 74 RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106
>12_02_0954 - 24757417-24758214
Length = 265
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 57 TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 188
T +RPRP+ A A+ A+ A+G Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146
>11_01_0763 + 6402901-6403971,6404581-6404826
Length = 438
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = -3
Query: 745 WAVRRVRWEVYISRARLVNRQIAWRRHPRC 656
W RRVRW R R R WRR PRC
Sbjct: 253 WRERRVRWRRPAWRER---RGRWWRRRPRC 279
>07_03_0658 - 20366559-20367562,20367745-20367937
Length = 398
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 168 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 335
V+ G+ H + M L +HG V + L+P L FRQ + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 598 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 500
AG + +SH + P L +FR ++ L+K GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163
>01_01_0198 + 1718374-1718875,1719591-1719604
Length = 171
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 745 WAVRRVRWEVYISRARLVNRQIAWRRHPRC 656
W RR RW R R R WRR PRC
Sbjct: 87 WRERRTRWRRPAWRERRGRR---WRRRPRC 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,558,916
Number of Sequences: 37544
Number of extensions: 546579
Number of successful extensions: 1443
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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