Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_J19
(770 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.10
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.32
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 30 0.42
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.3
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 6.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.1
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.10
Identities = 22/74 (29%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Frame = +3
Query: 336 AXXTXFPSPVPPXXXPXCXAXXAPXPLVXPXPRGXXPPAXSXXXPXX*PLPVPPPPXXGX 515
A P+ PP A AP P+ P PA S P P +PP P
Sbjct: 1040 APPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSV 1099
Query: 516 XEXXVXXP-VAFSP 554
V P VA P
Sbjct: 1100 AAPPVPKPSVAVPP 1113
Score = 29.5 bits (63), Expect = 0.56
Identities = 24/74 (32%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Frame = +3
Query: 354 PSPVPPXXXPXCXAXXAPXPLV----XPXPRGXXP-PAXSXXXPXX*PLP--VPPPPXXG 512
PS +PP P A P P V P P G P P S P P+P PP P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV-PVPSGAPPVPKPS 1146
Query: 513 XXEXXVXXPVAFSP 554
V P P
Sbjct: 1147 VAAPPVPAPSGAPP 1160
Score = 25.4 bits (53), Expect = 9.1
Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 10/59 (16%)
Frame = +3
Query: 354 PSPVPPXXXPXCXAXXAPXPL--VXPXPR---GXXP-PAXSXXXPXX*PL----PVPPP 500
PS PP P A P P + P P+ G P P S P P PVPPP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.32
Identities = 21/93 (22%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Frame = +1
Query: 322 GGGGARXQXXSPPPXPXAXRXXAXPXXPQXPLSXPXP-----EAXXPXPXPXXNXXXNRX 486
G G + PPP P + + P PQ + P P + P P +
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387
Query: 487 XXLLPPXXXXXRXPXXXPLPSPXRSXCPXAAXP 585
PP P PL + R+ P P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 29.9 bits (64), Expect = 0.42
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Frame = +3
Query: 354 PSPVPPXXXPXCXAXXAPXPLVXPXP--RGXXPPAXSXXXPXX*PLPVPPPP 503
P P PP A AP P+ P P G PP P P PPPP
Sbjct: 732 PPPPPPAVIVPTPAP-APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.1 bits (62), Expect = 0.74
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +3
Query: 354 PSPVPPXXXPXCXAXXAPXPLVXPXPRGXXPPAXSXXXPXX*PLPVPPPP 503
P+ + P P P P++ P PP + P P P PPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP---PPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 429 PRGXXPPAXSXXXPXX*PLPVPPPP 503
P+ PP S P P+ VPPPP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPP 1718
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/62 (25%), Positives = 17/62 (27%)
Frame = +3
Query: 354 PSPVPPXXXPXCXAXXAPXPLVXPXPRGXXPPAXSXXXPXX*PLPVPPPPXXGXXEXXVX 533
P PP P P P PP + P P PPPP V
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPS-APPPPLPASSAPSVP 1744
Query: 534 XP 539
P
Sbjct: 1745 NP 1746
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 320 LRSLISNLSNTCDLTPLPEWSCEQSAW 240
+RS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/50 (28%), Positives = 16/50 (32%)
Frame = +3
Query: 354 PSPVPPXXXPXCXAXXAPXPLVXPXPRGXXPPAXSXXXPXX*PLPVPPPP 503
P+P P P P + P PP S P LP P P
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQP 177
Score = 25.4 bits (53), Expect = 9.1
Identities = 17/62 (27%), Positives = 18/62 (29%)
Frame = +3
Query: 360 PVPPXXXPXCXAXXAPXPLVXPXPRGXXPPAXSXXXPXX*PLPVPPPPXXGXXEXXVXXP 539
P P P + P P P P P S P VPP P P
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
Query: 540 VA 545
VA
Sbjct: 211 VA 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,405
Number of Sequences: 5004
Number of extensions: 17809
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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