Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_J18
         (976 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   0.083
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   0.61 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   6.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.0  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 971 PXPPPPPPP 945
           P PPPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 26.2 bits (55), Expect(2) = 0.083
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 970 PXPPPPPPP 944
           P PPPPPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 25.0 bits (52), Expect(2) = 0.083
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 964 PPPPPPPXXXXFF 926
           PPPPPPP    F+
Sbjct: 307 PPPPPPPPSNDFW 319


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 971 PXPPPPPPP 945
           P PPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 26.2 bits (55), Expect(2) = 0.61
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 970 PXPPPPPPP 944
           P PPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 21.8 bits (44), Expect(2) = 0.61
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 976 PXPXPPPPPP 947
           P P PPPP P
Sbjct: 905 PTPPPPPPLP 914


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 976 PXPXPPPPPPP 944
           P P PPPPPPP
Sbjct: 234 PLPAPPPPPPP 244



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 971 PXPPPPPPP 945
           P PPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 970 PXPPPPPPP 944
           P PPPPPPP
Sbjct: 189 PPPPPPPPP 197


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 6.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -3

Query: 965 PPPPPPP 945
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 6.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 964 PPPPPPP 944
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 20.6 bits (41), Expect(2) = 6.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 971 PXPPPPP 951
           P PPPPP
Sbjct: 311 PPPPPPP 317



 Score = 20.6 bits (41), Expect(2) = 6.8
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -1

Query: 970 PXPPPPP 950
           P PPPPP
Sbjct: 311 PPPPPPP 317


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 971 PXPPPPPPP 945
           P PPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 970 PXPPPPPPP 944
           P PPPPPPP
Sbjct: 775 PPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,477
Number of Sequences: 5004
Number of extensions: 9496
Number of successful extensions: 198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)