Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_J17
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 0.30
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 29 0.38
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 1.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 1.0
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.2
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.2
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.2
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 5.6
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 790 PPPPPPPP 767
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 26.6 bits (56), Expect(2) = 0.30
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 790 PPPPPPPP 767
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 790 PPPPPPPP 767
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 813 GGGGXXXXPPPPPPP 769
G G PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
Score = 22.2 bits (45), Expect(2) = 0.30
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 805 GXPXXPPPPP 776
G P PPPPP
Sbjct: 759 GGPPPPPPPP 768
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 29.5 bits (63), Expect = 0.60
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 808 GGXPXXPPPPPPPP 767
G P PPPPPPPP
Sbjct: 939 GVMPAFPPPPPPPP 952
Score = 26.6 bits (56), Expect(2) = 0.38
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 790 PPPPPPPP 767
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Score = 21.8 bits (44), Expect(2) = 0.38
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 799 PXXPPPPPPP 770
P PPPPP P
Sbjct: 905 PTPPPPPPLP 914
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2
Query: 808 GGXPXXPPPPPPPP 767
GG P PPPPPPPP
Sbjct: 303 GGLP--PPPPPPPP 314
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.7 bits (61), Expect = 1.0
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2
Query: 799 PXXPPPPPPPP 767
P PPPPPPPP
Sbjct: 6 PGNPPPPPPPP 16
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -2
Query: 808 GGXPXXPPPPPPPP 767
G P PPPPPPP
Sbjct: 17 GFEPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Frame = -1
Query: 815 GGGGGXXXXPPPPPPPXXXXXXXV--XXXXXXXPPPP 711
G G PPPPPPP + PPPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 790 PPPPPPPP 767
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 790 PPPPPPPP 767
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 799 PXXPPPPPPPP 767
P PPPPPPP
Sbjct: 234 PLPAPPPPPPP 244
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 790 PPPPPPPP 767
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 790 PPPPPPPP 767
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 5.6
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 814 GGGGXPXXPPPPP 776
G GG P PPPPP
Sbjct: 282 GPGGAPLVPPPPP 294
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 768 GGGGGGGGXXGXPPP 812
GG GG GG G PPP
Sbjct: 188 GGFGGFGGGSGGPPP 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,509,931
Number of Sequences: 5004
Number of extensions: 16579
Number of successful extensions: 292
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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