Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_J14
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433...    31   0.99 
12_02_1174 - 26696869-26698191                                         29   3.0  
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     29   4.0  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   7.0  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   9.2  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   9.2  

>07_03_0792 -
           21541301-21542143,21542426-21542661,21543177-21543373,
           21543459-21544173,21544250-21544892,21545970-21546139,
           21546442-21546943
          Length = 1101

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +1

Query: 406 PPARXXPXAPXACPXXPXQXSPTXXXXTXXPXLXPGIXXXXPXPPL 543
           PP    P AP A P  P   S         P   PG     P PPL
Sbjct: 586 PPEPSPPPAPKAAPPPPPPKSTGPGPPRPPPPAMPGSSKTRPPPPL 631


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 25/108 (23%), Positives = 30/108 (27%)
 Frame = +2

Query: 431 PLXLAXXPRXRXXPXXXTXPXPPXSXLESXXXPXDPXXLPPPXLPTXXXVRPAPXLXXXX 610
           P  L+  P     P   T   PP         P  P  LPPP  P      P P      
Sbjct: 116 PPALSPVPPPPPPPRTRTRVEPPHRP--PPVKPQPPPSLPPPPPPPPPPPPPRPPSVKPP 173

Query: 611 GXXPXXXPXLLXRXXGPXXPXXLLLXXLRXXXMSXXXXEPPXLRRPXP 754
              P   P    +   P  P       ++   +      PP L  P P
Sbjct: 174 VVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSP 221


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/71 (25%), Positives = 22/71 (30%)
 Frame = +2

Query: 344 PXXXXHKPQXPPAGXAXXGXRXXXAXXPXPLXLAXXPRXRXXPXXXTXPXPPXSXLESXX 523
           P    + P  P AG             P P   A  P  +  P     P PP S + +  
Sbjct: 399 PAPPTYPPADPAAGGYTSQPYMGAPPPPPPGSYAPVPWGQPPPYASYPPPPPGSSMYNPP 458

Query: 524 XPXDPXXLPPP 556
            P      PPP
Sbjct: 459 PPAPGQATPPP 469


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 238  HHALCSHDHSGSGVRSQVLQRLEMRLRSGGGGAR 339
            H A C+ D  G GVR + ++    RLR+G  G+R
Sbjct: 1373 HEAHCAQDRRGDGVRPRQIR----RLRAGEAGSR 1402


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
 Frame = +2

Query: 365 PQXPPAGXAXXGXRXXXAXXPXPLXLAXXPRXRXX-PXXXTXPXPPXSXLESXXXPXDPX 541
           P  PP      G +   +  P P      P  +         P PP   L +   P  P 
Sbjct: 545 PPPPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPP 604

Query: 542 XLPPPXLPTXXXVRPAP 592
             PPP +     V P P
Sbjct: 605 PPPPPPILPNRSVPPPP 621


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/56 (30%), Positives = 17/56 (30%)
 Frame = -2

Query: 591 GAGRTXXXVGSXGGGXKXGSWGXXXDSRXEXGGXGXVXXXGXXLXRGXWASXRGXG 424
           G G      G  GGG   G  G     R   GG G     G     G     RG G
Sbjct: 63  GGGGVGGGYGGGGGGYGGGGGGYGGGGRGGGGGGGYGGGGGGGRGGGGGGGGRGGG 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,262,311
Number of Sequences: 37544
Number of extensions: 209173
Number of successful extensions: 927
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)