Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_J13
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 125 4e-29
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 122 3e-28
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 2.8
09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691 29 4.8
06_03_0543 + 21967787-21970261 29 4.8
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 29 4.8
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 6.4
04_04_0907 + 29304830-29305030,29305296-29305547 28 6.4
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 8.5
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 125 bits (301), Expect = 4e-29
Identities = 54/94 (57%), Positives = 71/94 (75%)
Frame = -3
Query: 596 PAQDHQPIXEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 417
P DHQPI E++ NIP IA C+TDSP R+VDI IP N K +SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMR 190
Query: 416 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 315
G + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 191 GTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 122 bits (294), Expect = 3e-28
Identities = 52/90 (57%), Positives = 68/90 (75%)
Frame = -3
Query: 596 PAQDHQPIXEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 417
P DHQPI E++ NIP IA C+TDSP R+VDI IP N K SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR 190
Query: 416 GVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
G + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 191 GTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>09_02_0160 - 5109290-5109626,5109918-5110026,5110295-5110691
Length = 280
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 468 VGRLGVAWDSNV-HKSXWGVCVAQSNHRNVDI*SFXNGL 581
V LG+A D+NV H WG C A S R V I S+ +GL
Sbjct: 205 VSSLGLAGDANVLHFGAWG-CTADSRIRRV-ISSYLSGL 241
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -3
Query: 458 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 369
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 441 QQPPHQTNRVGRLGVAWDSNVHKSXWGVCVAQS 539
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 605 YWTPAQDHQPIXE-ASYVNIPVIALCNTDSPXRFVDIAIPCNT 480
Y P D + E A+ NIP+I L + D P +IA C T
Sbjct: 20 YARPESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +3
Query: 357 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 473
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,985,397
Number of Sequences: 37544
Number of extensions: 311004
Number of successful extensions: 784
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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