Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_J10
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   145   7e-36
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   145   7e-36
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   1.7  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   3.9  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   8.9  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  145 bits (351), Expect = 7e-36
 Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 4/188 (2%)
 Frame = -3

Query: 747 RGHIIEKIPRTS--PGCSRQSSRRSTRPNRLSFS*GASRXXSDILKVYKSQRLRAGKGKM 574
           RGH IE+IP        + QS +++     L     A R   D++KV  S++LRAGKGK+
Sbjct: 140 RGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYR---DVIKVANSRKLRAGKGKL 196

Query: 573 RNRRRIQRKGPLIIFNQGFRV*LAPSATFPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQS 394
           RNRR +QR+GPL++FN+   + +      PGVE           LAPGGHLGRFVIWT+S
Sbjct: 197 RNRRHVQRRGPLVVFNEDTGI-VKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKS 255

Query: 393 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-T 220
           AFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  
Sbjct: 256 AFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHV 315

Query: 219 RKLNPLTN 196
           +K NPL N
Sbjct: 316 QKKNPLKN 323


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  145 bits (351), Expect = 7e-36
 Identities = 85/188 (45%), Positives = 117/188 (62%), Gaps = 4/188 (2%)
 Frame = -3

Query: 747 RGHIIEKIPRTS--PGCSRQSSRRSTRPNRLSFS*GASRXXSDILKVYKSQRLRAGKGKM 574
           RGH IE+IP        + QS +++     L     A R   D++KV  S++LRAGKGK+
Sbjct: 140 RGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYR---DVVKVANSRKLRAGKGKL 196

Query: 573 RNRRRIQRKGPLIIFNQGFRV*LAPSATFPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQS 394
           RNRR +QR+GPL++FN+   + +      PGVE           LAPGGHLGRFVIWT+S
Sbjct: 197 RNRRHVQRRGPLVVFNEDAGI-VKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKS 255

Query: 393 AFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPN-KRVIRA-T 220
           AFG LD +FGS    ++ KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  
Sbjct: 256 AFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHV 315

Query: 219 RKLNPLTN 196
           +K NPL N
Sbjct: 316 QKKNPLKN 323


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 422 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 288
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 416 VSSSGLSPHSAGLTPYSGHGRHHRNK 339
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/65 (23%), Positives = 29/65 (44%)
 Frame = -3

Query: 384 RLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNP 205
           RL+    +W     ++    +PQ K  +    + LK DEIR+        V+  + +LN 
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELNK 318

Query: 204 LTNXQ 190
           + + +
Sbjct: 319 VRSFE 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,286
Number of Sequences: 5004
Number of extensions: 49708
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)