Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_J10
(761 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 146 2e-35
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 144 9e-35
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.3
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.3
09_06_0015 - 20234231-20234344,20234846-20234902,20234968-202351... 29 4.0
02_04_0073 - 19471254-19472681 29 4.0
03_03_0125 - 14630078-14630136,14630197-14631160 28 9.3
03_03_0122 - 14617879-14618871 28 9.3
01_06_1365 - 36690267-36692222 28 9.3
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 146 bits (353), Expect = 2e-35
Identities = 84/212 (39%), Positives = 123/212 (58%), Gaps = 3/212 (1%)
Frame = -3
Query: 747 RGHIIEKIPRTSP--GCSRQSSRRSTRPNRLSFS*GASRXXSDILKVYKSQRLRAGKGKM 574
RGH IE +P S +S ++++ ++ GA +D K S +R GKGKM
Sbjct: 144 RGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGA---YADAEKAKDSVGIRPGKGKM 200
Query: 573 RNRRRIQRKGPLIIFN-QGFRV*LAPSATFPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQ 397
RNRR I RKGPLI++ +G ++ + PGV+ LAPGGHLGRFVIWT+
Sbjct: 201 RNRRYINRKGPLIVYGTEGSKI-VKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTE 259
Query: 396 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATR 217
SAF +L+ ++G+++ PS +KK F LP+PKMAN DL R++ SDE++ V++ NK V R +
Sbjct: 260 SAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREK 319
Query: 216 KLNPLTNXQGHAETQSLRGRAEEESYLRAAQK 121
+ NPL N + G A + + L A +
Sbjct: 320 RKNPLKNVAAVLKLNPYFGTARKMATLAEAAR 351
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 144 bits (348), Expect = 9e-35
Identities = 86/212 (40%), Positives = 120/212 (56%), Gaps = 3/212 (1%)
Frame = -3
Query: 747 RGHIIEKIPRTS--PGCSRQSSRRSTRPNRLSFS*GASRXXSDILKVYKSQRLRAGKGKM 574
RGH IE +P S +S ++ + ++ GA +D K S +RAGKGKM
Sbjct: 143 RGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGA---YADAEKTKDSVAIRAGKGKM 199
Query: 573 RNRRRIQRKGPLIIFN-QGFRV*LAPSATFPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQ 397
RNRR I RKGPLI++ +G +V + PGV+ LAPGGHLGRFVIWT+
Sbjct: 200 RNRRYINRKGPLIVYGTEGSKV-VKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTE 258
Query: 396 SAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATR 217
AF +LD ++G + TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ NK V
Sbjct: 259 CAFKKLDEVYGGFDTPALKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREA 318
Query: 216 KLNPLTNXQGHAETQSLRGRAEEESYLRAAQK 121
+ NPL N + G A + + L A +
Sbjct: 319 RRNPLKNVAAVLKLNPYFGTARKMAALAEAAR 350
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 443 SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFSSLM 270
S+LR + LD+SSS +P S+ H HH+ + S WP S ++
Sbjct: 379 SFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPSPML 438
Query: 269 RSGRSSVLPTNA 234
SG LP +A
Sbjct: 439 SSGLGLGLPYDA 450
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -3
Query: 438 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 298
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>09_06_0015 -
20234231-20234344,20234846-20234902,20234968-20235111,
20235581-20235745,20235817-20236005,20236086-20236326,
20236412-20236512,20236704-20237241,20238101-20238132,
20238677-20238760
Length = 554
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = -3
Query: 363 SWKTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNXQGH 184
S ++PS + P P + L R + DE L+A ++ ++A ++ +
Sbjct: 367 SHRSPSLYPHVEHAPSPALTEQRLLREQQDDEYLASLQADQEKELKALQEAELRRLEETA 426
Query: 183 AETQSLRGRAEEESYLRAAQKEELE 109
A +L + +EE R Q EE E
Sbjct: 427 AREAALEKQKQEEEERRKKQLEEEE 451
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.0
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 398 SPHSAGLTPYSGHGRHHRNKR 336
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 420 GRFVIWTQSAFGRL-DPLFGSWK 355
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 420 GRFVIWTQSAFGRL-DPLFGSWK 355
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_1365 - 36690267-36692222
Length = 651
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 182 AWPXLLVSGFNLRVARITRLLGARRTF 262
AWP L V G+N ++ R L AR +F
Sbjct: 526 AWPDLRVRGYNPKMQRCNSNLSARSSF 552
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,560,641
Number of Sequences: 37544
Number of extensions: 378811
Number of successful extensions: 1013
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -