Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_J09
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.7  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   5.2  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 1/85 (1%)
 Frame = +3

Query: 417  PPPPLPXXXSXPXXVGAXXXXRSPXSPLXXXPXXXXXXXPLXPPXPXPXXXXPXXXXPPX 596
            PP PLP   + P  V +        +     P          PP P P    P    P  
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081

Query: 597  A-PXPXXXXXXPXSXXTXXRXPPPR 668
            A P P      P    +    P P+
Sbjct: 1082 APPVPAPSGIPPVPKPSVAAPPVPK 1106



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/87 (24%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
 Frame = +3

Query: 345  PXVXXPXPXXXFGXXXXXXXXCXXPPPPLPXXXSX-PXXVGAXXXXRSPXSPLXXXPXXX 521
            P V  P      G           PP P P      P    A     +P S +   P   
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185

Query: 522  XXXXPLXPPXPXPXXXXPXXXXPPXAP 602
                P+ PP   P    P    PP  P
Sbjct: 1186 AGVPPVPPPSEAPPVPKPSVGVPPVPP 1212



 Score = 25.8 bits (54), Expect = 6.9
 Identities = 22/89 (24%), Positives = 23/89 (25%), Gaps = 1/89 (1%)
 Frame = +3

Query: 345  PXVXXPXPXXXFGXXXXXXXXCXXPPPPLPXXXSXPXXV-GAXXXXRSPXSPLXXXPXXX 521
            P V  P      G           PP P P     P     A      P S     P   
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204

Query: 522  XXXXPLXPPXPXPXXXXPXXXXPPXAPXP 608
                P+ PP   P    P    PP  P P
Sbjct: 1205 VGVPPVPPPSTAPPVPTPSAGLPP-VPVP 1232


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/82 (23%), Positives = 22/82 (26%)
 Frame = +3

Query: 417 PPPPLPXXXSXPXXVGAXXXXRSPXSPLXXXPXXXXXXXPLXPPXPXPXXXXPXXXXPPX 596
           PPP +P   S P         R+   P+   P       P  PP   P         PP 
Sbjct: 391 PPPAIP-GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL 449

Query: 597 APXPXXXXXXPXSXXTXXRXPP 662
            P        P         PP
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPP 471


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 363 LGXXRGXRXXXXXPLRSLISNLSNTCDLTPLPEWSCEQSAW 241
           +G  R         +RS+   L    D+TP+ +W  ++S W
Sbjct: 95  VGRSRSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,243,214
Number of Sequences: 5004
Number of extensions: 13056
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)