Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_J07
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 27 2.0
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.0
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 27 2.0
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 2.7
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 27 3.6
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 4.7
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 26 4.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 8.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.2
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 8.2
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 8.2
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.2
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 398 AGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSG---RPLTFTGGEAATYRG 544
A S R TP+ RS STA R + G +G P T + ++ + RG
Sbjct: 142 ASSARQTPAPSRSGASTAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRG 193
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = +3
Query: 168 TRRPIPSEVRTRMR*GGYRGQHYNQTARLTPRXAQPTEPSRRIEGSKTSAVSVRQPVGPP 347
T+ P P + +++R GG + TPR A P ++ S S QP PP
Sbjct: 57 TKLPPPPKHASQLRAGG-------SSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPSQPP 109
Query: 348 RRCRWCPGIPRWTRTSLPGR 407
+ P +P SLP R
Sbjct: 110 KE----PALPSRGTPSLPSR 125
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 171 RRPIPSEVRTRMR*GGYRGQHYNQTARLTPRXAQPTE----PSRRIEGSKTSAVSVRQPV 338
+R P E+ TR + R + +T+ L P +PT P R + + S ++ + +
Sbjct: 112 QRESPEEIETRKKDRKNRREMLKRTSALQPAAPKPTHKKPVPKRNVGAERKS--TINEDL 169
Query: 339 GPPRRCRWCPGIPR 380
PP + IP+
Sbjct: 170 LPPNKVLLLQNIPQ 183
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 172 DVRSPPRSEPG*GRGATAVNTTTRRRGSPQGTPSRRSLR 288
+++ PP G GRGAT TT G Q PS+ S++
Sbjct: 10 NMQPPPNYVAGLGRGATGF-TTRSDLGPAQELPSQESIK 47
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 3.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 597 PSPSSRGPEAGIRPYVPGPL 538
P+ + RG E + PY+PGP+
Sbjct: 348 PNEAGRGDERRVIPYMPGPV 367
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 398 AGSGRDTPSTGRSNHSTAAR*SAGSA-PHGLTPSGRPLTFTGGEAAT 535
+G GR P N + SA +A P+GL P PLT + T
Sbjct: 862 SGMGRAAPGMFMGNVGSFENLSANAASPYGLPPQQTPLTNAATQQTT 908
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 425 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 291
STV +P+ + ++ + S RPD LP G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 347 QTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHST 448
QT P++ N P+ N PA + +TP+ + T
Sbjct: 662 QTAPMIQPNVPVSANSPAQA--NTPAADSTKSGT 693
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 362 VSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAAT 535
VS +TPL S T +T S S++A+ + S TPS PL+ AT
Sbjct: 249 VSSSTPL-----TSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTAT 301
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +2
Query: 497 GRPLTF-TGGEAATYRGPGTYGRIPASGPRLDGDGSV 604
G P F GG A Y G G +PA G + GSV
Sbjct: 515 GMPTQFPAGGPAPGYPGMNARGPVPAQGRPMMMPGSV 551
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 392 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 309
G P TP APS G P+ +G++
Sbjct: 95 GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 8.2
Identities = 22/84 (26%), Positives = 35/84 (41%)
Frame = +2
Query: 290 ANRRL*NVGRLGTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAG 469
+N+R N R A+R + P D N GS + + G+ T+ S+
Sbjct: 189 SNKRQTNYSREKDASRSIDSSNPSAEYRD--DINNTFGSQTVSSANGKEVPQTSED-SSS 245
Query: 470 SAPHGLTPSGRPLTFTGGEAATYR 541
APH + SG + GG +Y+
Sbjct: 246 QAPHHSSSSGHAPSQQGGNKHSYK 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,802
Number of Sequences: 5004
Number of extensions: 49343
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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