Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_J07
(719 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.83
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.83
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.83
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 31 1.1
U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter... 31 1.1
L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein. 31 1.1
Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 30 1.9
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 30 1.9
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 29 2.5
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 29 2.5
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 29 2.5
Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 29 3.3
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 29 4.4
L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protei... 29 4.4
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 29 4.4
AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical ... 29 4.4
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 5.8
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 5.8
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 28 5.8
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 28 7.7
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 7.7
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 28 7.7
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 0.83
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 395 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGTYGRIPAS 574
PAG+G P + + GS P G P+GRP G+++ G P
Sbjct: 323 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREG--PRG 380
Query: 575 GPR 583
GPR
Sbjct: 381 GPR 383
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 0.83
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 395 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGTYGRIPAS 574
PAG+G P + + GS P G P+GRP G+++ G P
Sbjct: 344 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREG--PRG 401
Query: 575 GPR 583
GPR
Sbjct: 402 GPR 404
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 0.83
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +2
Query: 395 PAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEAATYRGPGTYGRIPAS 574
PAG+G P + + GS P G P+GRP G+++ G P
Sbjct: 329 PAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPRGGPGKSSEESSESREG--PRG 386
Query: 575 GPR 583
GPR
Sbjct: 387 GPR 389
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 389 SGPAGYSGTPAAPSGRPDGLPYRDG 315
+GPAG G P AP PDG P +DG
Sbjct: 144 AGPAGPDGAPGAPG--PDGQPGQDG 166
>U50191-3|AAK31557.1| 380|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 2 protein.
Length = 380
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 386 GPAGYSGTPAAPSG-RPDGLPYRDGRRFRAFDSPRRL 279
GP+G SG PA P PDG P R G A P R+
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPGTTPNASCIPERV 162
>L12706-1|AAA17398.2| 360|Caenorhabditis elegans collagen protein.
Length = 360
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -1
Query: 386 GPAGYSGTPAAPSG-RPDGLPYRDGRRFRAFDSPRRL 279
GP+G SG PA P PDG P R G A P R+
Sbjct: 126 GPSGDSGLPALPGAPGPDGAPGRPGTTPNASCIPERV 162
>Z81050-3|CAB02849.1| 291|Caenorhabditis elegans Hypothetical
protein C50B6.4 protein.
Length = 291
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -1
Query: 389 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 309
+GPAG +G P AP G+P G P +DG+R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGQR 198
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical protein
K04H4.1b protein.
Length = 1502
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 410 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 315
VP +Q SG GY G P P + DG P RDG
Sbjct: 1129 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1164
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical protein
K04H4.1a protein.
Length = 1759
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 410 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 315
VP +Q SG GY G P P + DG P RDG
Sbjct: 1386 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1421
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
protein.
Length = 1758
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = -1
Query: 410 VPTRQAGSGPAGYSGTPAAPSGR----PDGLPYRDG 315
VP +Q SG GY G P P + DG P RDG
Sbjct: 1385 VPGQQGRSGDNGYPGAPGQPGIKGPRGDDGFPGRDG 1420
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 29.5 bits (63), Expect = 2.5
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Frame = +2
Query: 113 AGPRXFRAHPLNDSSALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKXRPADGAFEA 292
+GP + SS P+S P +P G ST+ G++ G+ +
Sbjct: 305 SGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTG----STITISGSSSIIVSTVSGSTVS 360
Query: 293 NRRL*NVGRLG--TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SA 466
+ L TA ++ TVP S P Q+ +G TPS S + + +
Sbjct: 361 GSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPS 420
Query: 467 GSAPHG-----LTPSGRPLTF-TGGEAATY 538
S P G +TP G + TG +T+
Sbjct: 421 SSTPTGSSQSTITPEGSTASSPTGSTGSTF 450
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 29.5 bits (63), Expect = 2.5
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Frame = +2
Query: 113 AGPRXFRAHPLNDSSALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKXRPADGAFEA 292
+GP + SS P+S P +P G ST+ G++ G+ +
Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTG----STITISGSSSIIVSTVSGSTVS 567
Query: 293 NRRL*NVGRLG--TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SA 466
+ L TA ++ TVP S P Q+ +G TPS S + + +
Sbjct: 568 GSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPS 627
Query: 467 GSAPHG-----LTPSGRPLTF-TGGEAATY 538
S P G +TP G + TG +T+
Sbjct: 628 SSTPTGSSQSTITPEGSTASSPTGSTGSTF 657
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 29.5 bits (63), Expect = 2.5
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 8/150 (5%)
Frame = +2
Query: 113 AGPRXFRAHPLNDSSALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKXRPADGAFEA 292
+GP + SS P+S P +P G ST+ G++ G+ +
Sbjct: 512 SGPTGSTVTVVPGSSTSPAPSSSPNPSSSPASTG----STITISGSSSIIVSTVSGSTVS 567
Query: 293 NRRL*NVGRLG--TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SA 466
+ L TA ++ TVP S P Q+ +G TPS S + + +
Sbjct: 568 GSTGTSQSTLASSTATPGSSSTVPSSSSPQPSSQSPAPNTGSTTPSQTSSQSPSPSMNPS 627
Query: 467 GSAPHG-----LTPSGRPLTF-TGGEAATY 538
S P G +TP G + TG +T+
Sbjct: 628 SSTPTGSSQSTITPEGSTASSPTGSTGSTF 657
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -1
Query: 389 SGPAGYSGTPAAP--SGRPDGLPYRDGRR 309
+GPAG +G P AP G+P G P +DG R
Sbjct: 171 AGPAGDAGAPGAPGQDGQP-GAPGQDGHR 198
>Z74037-4|CAA98490.1| 295|Caenorhabditis elegans Hypothetical
protein F57B7.3 protein.
Length = 295
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 389 SGPAGYSGTPAAPSGR-PDGLPYRDGRRFR 303
+GP G +GTP P + DG P ++GRR R
Sbjct: 173 AGPQGDAGTPGQPGQQGQDGRPGQNGRRGR 202
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -1
Query: 425 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDG 315
ST +P GP G G P AP P G P +DG
Sbjct: 128 STSECIPCPAGAPGPQGPDGAPGAPG--PSGQPGQDG 162
>Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical
protein M195.3 protein.
Length = 687
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 323 GTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTA 451
GT A + + ++ TPL + + R+ PSTGR STA
Sbjct: 529 GTGAPKRSNGPAFNNQITPLAVSSTVSTARNGPSTGRRTESTA 571
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = -1
Query: 386 GPAGYSGTPAAPSGRP-DGLPYRDGRRFRAFD 294
GP GY G P P R DG P +G A+D
Sbjct: 144 GPTGYPGAPGEPGSRGLDGRPGANGVTLIAYD 175
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 28.7 bits (61), Expect = 4.4
Identities = 27/122 (22%), Positives = 44/122 (36%)
Frame = +2
Query: 170 PTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKXRPADGAFEANRRL*NVGRLGTAARRAAQ 349
P ++P P VG + S P P P + + + A
Sbjct: 500 PPANPTTA-TPTTVGTIGTSPTAPANLTTPTTAPVNPTSSTTAP---TAPVNPTSPTTAP 555
Query: 350 TVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRPLTFTGGEA 529
TVP V+ TP + T +T ++ +T + P +TP+ RP+T +
Sbjct: 556 TVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVV----TTPSTITPTTRPVTQPASQP 611
Query: 530 AT 535
AT
Sbjct: 612 AT 613
>L11247-3|AAA28008.1| 278|Caenorhabditis elegans Collagen protein
91 protein.
Length = 278
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -1
Query: 386 GPAGYSGTPAAPSGRP--DGLPYRDGRR 309
GPAG +G P AP G P DG P ++G+R
Sbjct: 173 GPAGDAGAPGAP-GAPGNDGQPGQNGQR 199
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 386 GPAGYSGTPAAPSGRP--DGLPYRDGRRFRAFDSP 288
GPAG +G+P P G P G P R G+R R P
Sbjct: 173 GPAGDAGSPGQP-GHPGSPGNPGRGGQRSRGLPGP 206
>AC006610-7|AAK85451.1| 392|Caenorhabditis elegans Hypothetical
protein C30F12.5 protein.
Length = 392
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 149 DSSALLHPTSDPLRGQNPDEVGGLPRSTLQPDGAAHPKXRPA 274
D + HP PL +P G +PR+ L P+GA P P+
Sbjct: 319 DEPRIGHPLYSPLPPIDPT-YGTIPRARLAPNGAPPPPLSPS 359
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 28.3 bits (60), Expect = 5.8
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 1/133 (0%)
Frame = +2
Query: 140 PLNDSSALLHPTSDP-LRGQNPDEVGGLPRSTLQPDGAAHPKXRPADGAFEANRRL*NVG 316
P+ +S L PTS L P VG P + P P P +
Sbjct: 612 PVVTTSPTLAPTSPTKLPTSPPSTVGTSPTA---PANLTTPTTAPVNPTSSTTAP---TA 665
Query: 317 RLGTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPS 496
+ + A TVP V+ TP + T +T ++ +T + P +TP+
Sbjct: 666 PVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVV----TTPSTITPT 721
Query: 497 GRPLTFTGGEAAT 535
RP+T + AT
Sbjct: 722 TRPVTQPASQPAT 734
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical protein
C12D12.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 5.8
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 1/133 (0%)
Frame = +2
Query: 140 PLNDSSALLHPTSDP-LRGQNPDEVGGLPRSTLQPDGAAHPKXRPADGAFEANRRL*NVG 316
P+ +S L PTS L P VG P + P P P +
Sbjct: 668 PVVTTSPTLAPTSPTKLPTSPPSTVGTSPTA---PANLTTPTTAPVNPTSSTTAP---TA 721
Query: 317 RLGTAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPS 496
+ + A TVP V+ TP + T +T ++ +T + P +TP+
Sbjct: 722 PVNPTSPTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPVV----TTPSTITPT 777
Query: 497 GRPLTFTGGEAAT 535
RP+T + AT
Sbjct: 778 TRPVTQPASQPAT 790
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 443 SD*SDRSTVYRVPTRQAGS--GPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDSPRRLRR 273
SD D S+ P R +G GP G S P PSG P G P+ G R P R R
Sbjct: 52 SDLPDPSSPPPAP-RPSGQPPGPQGPSDLPG-PSGAPPGPPHPSGPPHRPHPHPSRRPR 108
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/62 (29%), Positives = 24/62 (38%)
Frame = +2
Query: 326 TAARRAAQTVPLVSRNTPLDQNQPAGSGRDTPSTGRSNHSTAAR*SAGSAPHGLTPSGRP 505
T A R VP VS L PAG R T + + + A +AP P+ +
Sbjct: 307 TGAARTRPAVPAVSAPRALTSRAPAGPARPTTTRSATPATRTAVPPRATAPPKAAPASKA 366
Query: 506 LT 511
T
Sbjct: 367 PT 368
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 27.9 bits (59), Expect = 7.7
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +3
Query: 33 TSYEVPAQKGRAGYVRLNDLHGVVSRPRAQGILEPTH*TTPLHSYTRRPIPSE-VRTRMR 209
T E P G +GY+ G S P+ + +P TTP T P+ E V+
Sbjct: 87 TDRESPEDPGNSGYLA----SGAESGPK-KTTSKPA--TTPTPEPTTTPVEEEKVKVSPS 139
Query: 210 *GGYRGQHYNQTARLTPRXAQPTEPSRRIEGSKTSAVS 323
Y + LTP+ A TEP + +T ++
Sbjct: 140 SSTKEPSPYAENIMLTPKQAPGTEPRSNSQNPQTDRLA 177
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 407 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 312
P + G+G G +G P AP G G P +DG+
Sbjct: 219 PGQSGGAGAPGPAGAPGAPGG--PGQPGQDGQ 248
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 407 PTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGR 312
P GPAG +G P AP G P G P DG+
Sbjct: 185 PGAAGDKGPAGPNGNPGAP-GSP-GKPGEDGK 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,447
Number of Sequences: 27780
Number of extensions: 339197
Number of successful extensions: 1472
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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