Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_J04
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.8  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    22   7.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -2

Query: 307 PLXXXSPPPPPPXVXFXXXXXGXGGPPXKFPPXPXP 200
           P+    PPPPPP         G G PP   PP P P
Sbjct: 756 PIMGGPPPPPPP-----PGVAGAGPPP---PPPPPP 783



 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
 Frame = -2

Query: 304 LXXXSPPPPPPXVXFXXXXXG--XGGPPXKF---PPXPXPXCXRPXGLGXFYXLXPXPXN 140
           L   SPPPPPP V             PP      PP P P    P G+       P P  
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP----PPGVAGAGPPPPPPPP 782

Query: 139 PSLXXG 122
           P++  G
Sbjct: 783 PAVSAG 788


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 304 LXXXSPPPPPPXVXFXXXXXGXGGPPXKFPPXPXP 200
           L   +PPPPPP   F         PP + PP P P
Sbjct: 4   LPPGNPPPPPPPPGFE--------PPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/70 (27%), Positives = 21/70 (30%), Gaps = 1/70 (1%)
 Frame = -2

Query: 307  PLXXXSPPPPPPXVXFXXXXXGXGGPPXKFPPXPXPXCXRPXGLGXF-YXLXPXPXNPSL 131
            P    +PP P P V         G PP   P    P    P G           P  P+ 
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174

Query: 130  XXGKDPKPXP 101
              G  P P P
Sbjct: 1175 SSGIPPVPKP 1184



 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
 Frame = -2

Query: 292  SPPPPPPXVXFXXXXXGXGGPPXKFPPXPXPXCXRP-XGLGXFYXLXPXPXNPSLXXGKD 116
            +PP P P            G P   PP   P   +P  G+         P  P+   G  
Sbjct: 1168 APPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227

Query: 115  PKPXPRWKXXP 83
            P P P  K  P
Sbjct: 1228 PVPVPTAKAPP 1238


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 292 SPPPPPPXVXFXXXXXGXGGPPXK 221
           SPPPPP  +       G G P  K
Sbjct: 82  SPPPPPEGIKIKISTKGAGNPSAK 105


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = -2

Query: 289 PPPPPPXVXFXXXXXGXGGPPXKFPPXPXP 200
           PPPPP          G G      PP P P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.2 bits (45), Expect(2) = 7.5
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 289 PPPPPPXV 266
           PPPPPP V
Sbjct: 192 PPPPPPAV 199



 Score = 21.4 bits (43), Expect(2) = 7.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -2

Query: 307 PLXXXSPPPPPP 272
           P     PPPPPP
Sbjct: 184 PSDYNPPPPPPP 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,844
Number of Sequences: 5004
Number of extensions: 19621
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)