Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_J02
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 113 2e-26
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 44 3e-05
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 30 0.30
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 29 0.69
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 29 0.69
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 1.6
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 28 1.6
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 28 1.6
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 27 2.1
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 27 3.7
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 4.9
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 4.9
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 25 8.5
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 25 8.5
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 113 bits (273), Expect = 2e-26
Identities = 54/124 (43%), Positives = 81/124 (65%)
Frame = -2
Query: 390 RPLDIRTVAVSEDMTAAGEREVFFELNGQLRSVFIRDENASKEMKIHPKAVKGDKNQVGA 211
+ L ++ VA+ G+REV+FELNG+ R V + D+ A+ E P+A G+ V A
Sbjct: 1060 KTLIVKFVALGPLNPRTGQREVYFELNGENRHVTVEDKKAAIETVTRPRADPGNPGHVAA 1119
Query: 210 PMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPKAGTVKTVSITNGQKLEGDDLI 31
PM GT++ I+VKEG KV+KG IAVLSAMKME+++ AP +G +K++++ G + G DL
Sbjct: 1120 PMSGTIVEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQGDSVNGGDLC 1179
Query: 30 CTIE 19
+E
Sbjct: 1180 AVLE 1183
Score = 85.0 bits (201), Expect = 1e-17
Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Frame = -1
Query: 691 PYGGFPEPLRSKVLKDMPR-IEGRPGKELPSLNFDKXKGELKESFPDIDDEDVMSAAMYP 515
PYGGFPEPLR+ VLK + + RPGK LP+ +FD + L E F D D+ + +P
Sbjct: 959 PYGGFPEPLRTNVLKGRRQPLTDRPGKFLPAADFDAIRKLLSEKFGVSSDCDIAAYTQFP 1018
Query: 514 QVASDFFRFRDKYGPVKHLDTKTFLVGPAVGDTIEVKIERGKT 386
V ++ +F D+YG + + TK FL P + + + V+I++GKT
Sbjct: 1019 GVFEEYRQFVDRYGDLTTVPTKFFLSRPEMNEEMHVEIDQGKT 1061
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 43.6 bits (98), Expect = 3e-05
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Frame = -2
Query: 315 LNGQLRSVFIRDENASKEMKIHPKAV----KGDKNQVGAPMPGTVLTIKVKEGDKVEKGQ 148
LNG +V+ RDE + I + + D Q+ P PG ++ V+ G+ ++ G+
Sbjct: 677 LNGHSYTVYYRDEVTGTRISIDNLSCMLEQENDPTQLRTPSPGKLVRFLVETGEHIKAGE 736
Query: 147 PIAVLSAMKMEMIVQAPKAGTVKTVSITNGQKLEGDDLI 31
A + MKM M + A + G V+ + G L+ D++
Sbjct: 737 AYAEVEVMKMIMPLVATEDGVVQLIK-QPGASLDAGDIL 774
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -1
Query: 631 EGRPGKELPSLNFDK-XKGELKESFPDIDDEDVMSAAMYP 515
+ RPGK PSLNF+ K +L E F + E++M+ ++ P
Sbjct: 198 KNRPGKNQPSLNFENISKKDLTEEFKQV-IENLMNNSIIP 236
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 29.1 bits (62), Expect = 0.69
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 624 RPSILGMSFRTFDLNGSGNPPYG 692
RPS MS +F+LNGS NP +G
Sbjct: 671 RPSYGNMSRPSFELNGSRNPSHG 693
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 603 EGNSFPGRPSILGMSFRTFDLNGSGNPPYGIRWLPAGTPPPTRGR 737
E S+ PS+ +FR F S NP +R+ GTP GR
Sbjct: 270 EKESYEKSPSVYEKTFRLFSEKISHNPTQCLRYERGGTPLLASGR 314
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 655 VLKDMPRIEGRPGKELPS--LNFDKXKGELKESFPDIDDEDVMSAAM 521
++ D P++ P +PS LN D + EL S D+D+E + + ++
Sbjct: 354 IISDSPKLLSIPLNNVPSKSLNDDITQDELNSSNADVDEEVIETTSL 400
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 408 TSMVSPTAGPTRKVLVSRCLTGPYLSRKRKKSL 506
T + P PT+K ++R T P R R KSL
Sbjct: 63 TKFIEPEPSPTKKTKLTRRDTRPLAERARPKSL 95
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -1
Query: 478 YGPVKHLDTKTFLVGPAVG 422
YGP KHLD K + G VG
Sbjct: 380 YGPAKHLDNKHTIFGRVVG 398
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 219 VGAPMPGTVLTIKVKEGDKVEKGQPIAVL--SAMKMEMIVQAPKAGTVKT 76
V AP G + VKEGD + Q IAV+ SA E PK VKT
Sbjct: 88 VTAPDAGVLKEQLVKEGDTITIDQDIAVIDTSAAPPEGGSAGPKKDEVKT 137
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -1
Query: 616 KELPSLNFDKXKGELKESFPDIDDEDVMSAAMYPQVASDFFRF 488
K++P L+ D + + + D+D ED M + D F +
Sbjct: 168 KDIPKLHRDSVESPESQDWDDLDAEDWADPLMVSEYVVDIFEY 210
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -1
Query: 193 SHYQSEGRRQSREGAADSRALRYENGNDRSSPQGWYRQDRLDYKRTKTRRRRFDLHYRIK 14
S+Y+ + R + +E D R + N+R S +Y DR +KR T + D H R K
Sbjct: 359 SNYRDDYRHRRKE--RDHRDDQSSFRNERFS--NYYGDDRSYHKRRNTGNKNCDDHLRDK 414
Query: 13 KKKK 2
++
Sbjct: 415 SPER 418
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = -2
Query: 222 QVGAPMPGTVLTIKVKEGDKVEKGQPIAVLSAMKMEMIVQAPKAGTVKTVS 70
Q AP+ T TIK K P V SA + P A VS
Sbjct: 1039 QAAAPVTSTTTTIKQATTVSASKPAPSTVTSAASSPSNISKPSAPVANNVS 1089
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -2
Query: 318 ELNGQLRSVFIRDENASKEMKIHPKAVKGDKNQVGAPMPGTVL 190
E GQ + + D N + + VK D NQ + T+L
Sbjct: 796 ESKGQSKKTLLHDSNMESLKSVISRIVKKDSNQSDDSVESTIL 838
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -1
Query: 694 IPYGGFPEPLRSKVLKDMPRIEGRPGKELPSLN 596
+ YGG P+ +++ K+ I G PG+ L +N
Sbjct: 269 VVYGGAPKSEQARAAKNASVIIGTPGRLLDLIN 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,018
Number of Sequences: 5004
Number of extensions: 53489
Number of successful extensions: 185
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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