Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_J01
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.082
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.1  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 32.3 bits (70), Expect = 0.082
 Identities = 26/96 (27%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
 Frame = +1

Query: 352  PRPXXSRRXAXXXSGGPXXPXPXXXGX---AGLXXXPPXDXPGSXAVXXFPKPTXTX--- 513
            P+P  +       SG P  P P        A     PP   P +  V   P P+      
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA-GVPPVPPPSEAPPVP 1201

Query: 514  RMXVXXXNSSPPXXXXPPPAXXPXLAPXPXPTGXAP 621
            +  V      PP    P P     L P P PT  AP
Sbjct: 1202 KPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237



 Score = 29.5 bits (63), Expect = 0.58
 Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 5/104 (4%)
 Frame = +1

Query: 352  PRPXXSRRXAXXXSGGPXXPXPXXXGXAGLXXX--PPXDXPGSXAVXXFPKPTXTXRMXV 525
            P P          SG P  P P             PP   P S AV   P P+    +  
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP-SVAVPPVPAPSGAPPVPK 1125

Query: 526  XXXNSSP-PXXXXPPPAXXPXLA--PXPXPTGXAPXCXXSAXXP 648
                + P P     PP   P +A  P P P+G  P    S   P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAP 1169



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 25/104 (24%), Positives = 31/104 (29%), Gaps = 3/104 (2%)
 Frame = +1

Query: 346  HPPRPXXSRRXAXXXSG--GPXXPXPXXXGXAGLXXXPPXDXPGSXAVXXFPK-PTXTXR 516
            HPP    S+  +   +       P P     A     P  D P        P  P  T  
Sbjct: 990  HPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTST 1049

Query: 517  MXVXXXNSSPPXXXXPPPAXXPXLAPXPXPTGXAPXCXXSAXXP 648
              V   +S  P    P PA    +   P P+G  P    S   P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 8/107 (7%)
 Frame = +1

Query: 352  PRPXXSRRXAXXXSGGPXXPXPXXXGXAGLXXXPPXDX----PGSXAVXXFPKPTXTXRM 519
            P P  +       SG P  P P     + +   P        P    +   PKP+     
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103

Query: 520  XVXXXNSSPPXXXXP--PPAXXPXLA--PXPXPTGXAPXCXXSAXXP 648
                  + PP       PP   P +A  P P P+G  P    S   P
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAP 1150


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 544  PPXXXXPPPAXXPXLAPXPXPTGXAP 621
            PP    P PA  P   P P P   AP
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASSAP 1741



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/53 (28%), Positives = 18/53 (33%)
 Frame = +1

Query: 523  VXXXNSSPPXXXXPPPAXXPXLAPXPXPTGXAPXCXXSAXXPGAXWXLXPXVP 681
            V   +++PP    P P   P   P P      P    SA  P       P VP
Sbjct: 1692 VRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 19/85 (22%), Positives = 25/85 (29%)
 Frame = +1

Query: 394  GGPXXPXPXXXGXAGLXXXPPXDXPGSXAVXXFPKPTXTXRMXVXXXNSSPPXXXXPPPA 573
            G P    P     A +    P        V   P P+             P     P P+
Sbjct: 1437 GAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVPVPS 1496

Query: 574  XXPXLAPXPXPTGXAPXCXXSAXXP 648
              P +A  P P+  AP    S+  P
Sbjct: 1497 MIPSVAQQP-PSSVAPATAPSSTLP 1520


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 319 LRSLISNLSNTCDLTPLPEWSCEQSAW 239
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,967
Number of Sequences: 5004
Number of extensions: 17315
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)