Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_J01
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 37 0.019
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 37 0.019
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 36 0.044
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 31 1.3
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 30 1.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 5.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 5.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 5.1
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 29 5.1
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 6.7
Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical p... 28 8.9
Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical pr... 28 8.9
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 36.7 bits (81), Expect = 0.019
Identities = 23/89 (25%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Frame = +1
Query: 349 PPRPXXSRRXAXXXSGGPXXPXPXXXGXAGLXXXPPXDXPGSXAVXXFPKPTXTXRMXVX 528
PP P G P P P G G+ PP PG P P
Sbjct: 300 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
Query: 529 XXNSSPPXXXXP--PPAXXPXLAPXPXPT 609
PP P PP+ + P P P+
Sbjct: 360 PGMYPPPPPSRPPAPPSGHGMIPPPPPPS 388
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 36.7 bits (81), Expect = 0.019
Identities = 23/89 (25%), Positives = 27/89 (30%), Gaps = 2/89 (2%)
Frame = +1
Query: 349 PPRPXXSRRXAXXXSGGPXXPXPXXXGXAGLXXXPPXDXPGSXAVXXFPKPTXTXRMXVX 528
PP P G P P P G G+ PP PG P P
Sbjct: 310 PPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
Query: 529 XXNSSPPXXXXP--PPAXXPXLAPXPXPT 609
PP P PP+ + P P P+
Sbjct: 370 PGMYPPPPPSRPPAPPSGHGMIPPPPPPS 398
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 35.5 bits (78), Expect = 0.044
Identities = 30/111 (27%), Positives = 37/111 (33%)
Frame = -3
Query: 680 GTXGXRXQXAPGLXAEXXXXGAXPVGXGXGASXGXXAGGGXXWXGGLELXXXTXIRXVXV 501
G G Q AP + GA P+G G G + G AG G GG + +
Sbjct: 74 GGFGGAYQAAPAIGGGGSYAGAGPIGGGFGGAQGGYAGAGPI-GGGAQ---GGYAGAGPI 129
Query: 500 GLGKXXTAXDPGXSXGGXXXSPAXPXXXGXGXXGPPDXXXAXRREXXGRGG 348
G G G GG A P G G G A ++ GG
Sbjct: 130 GGGAQGGYAGAGPIGGGAQGGYAGPIGGGAGYQGGAPAQGAGYQQGPAVGG 180
Score = 28.7 bits (61), Expect = 5.1
Identities = 19/72 (26%), Positives = 24/72 (33%)
Frame = -3
Query: 647 GLXAEXXXXGAXPVGXGXGASXGXXAGGGXXWXGGLELXXXTXIRXVXVGLGKXXTAXDP 468
G A+ GA P+G G GGG + GG + VG G P
Sbjct: 130 GGGAQGGYAGAGPIGGGAQGGYAGPIGGGAGYQGGAPAQGAGYQQGPAVGGGAGYQQQAP 189
Query: 467 GXSXGGXXXSPA 432
G +PA
Sbjct: 190 AQGAGYQQQAPA 201
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +2
Query: 500 PLXPXGCXXPPXTPAXQXXPLPLXXXXXXXPPIXXQPVGPL 622
PL P PP P Q +PL PP+ P+ PL
Sbjct: 1277 PLPPANTIMPPPPPYNQASAVPLNPPRTALPPLQLPPLQPL 1317
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = -3
Query: 716 GRXXXGXXXXLXGTXGXRXQXAPGLXAEXXXXGAXPVGXGXGASXGXXAGGGXXWXGG 543
G G G G Q AP A A P G G A G AGGG + GG
Sbjct: 369 GGAAAGGGYNAGGGGGGAPQAAPAPQAAPAP--AAPAGGGYNAGGGGGAGGGGGYAGG 424
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/97 (25%), Positives = 30/97 (30%)
Frame = +1
Query: 391 SGGPXXPXPXXXGXAGLXXXPPXDXPGSXAVXXFPKPTXTXRMXVXXXNSSPPXXXXPPP 570
+GGP P P G PP PG P + + PP PPP
Sbjct: 710 TGGPPPP-PGLPPITG--GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP-PPP 765
Query: 571 AXXPXLAPXPXPTGXAPXCXXSAXXPGAXWXLXPXVP 681
P P P P G PG + P +P
Sbjct: 766 GGCPP-PPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/97 (25%), Positives = 30/97 (30%)
Frame = +1
Query: 391 SGGPXXPXPXXXGXAGLXXXPPXDXPGSXAVXXFPKPTXTXRMXVXXXNSSPPXXXXPPP 570
+GGP P P G PP PG P + + PP PPP
Sbjct: 710 TGGPPPP-PGLPPITG--GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP-PPP 765
Query: 571 AXXPXLAPXPXPTGXAPXCXXSAXXPGAXWXLXPXVP 681
P P P P G PG + P +P
Sbjct: 766 GGCPP-PPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 5.1
Identities = 25/97 (25%), Positives = 30/97 (30%)
Frame = +1
Query: 391 SGGPXXPXPXXXGXAGLXXXPPXDXPGSXAVXXFPKPTXTXRMXVXXXNSSPPXXXXPPP 570
+GGP P P G PP PG P + + PP PPP
Sbjct: 293 TGGPPPP-PGLPPITG--GPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP-PPP 348
Query: 571 AXXPXLAPXPXPTGXAPXCXXSAXXPGAXWXLXPXVP 681
P P P P G PG + P +P
Sbjct: 349 GGCPP-PPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 384
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 515 GCXXPPXTPAXQXXPLPLXXXXXXXPPIXXQPVGPLXAPXXRXXP 649
GC PP PA P P PP P AP P
Sbjct: 30 GCGAPPPPPACAPPPAPACGGGAPPPPAYAAPAPSYGAPAGGAYP 74
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +1
Query: 544 PPXXXXPPPAXXPXLAPXPXPTGXAPXCXXSAXXP 648
PP PPP P P P P P C P
Sbjct: 66 PPPPICPPPPPPPMPCPPPPPPMPRPSCPCMMQRP 100
>Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 535 NSSPPXXXXPPPAXXPXLAPXPXP 606
NSSP PPP+ P LAP P
Sbjct: 152 NSSPLLLFQPPPSLRPVLAPQQPP 175
>Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 535 NSSPPXXXXPPPAXXPXLAPXPXP 606
NSSP PPP+ P LAP P
Sbjct: 152 NSSPLLLFQPPPSLRPVLAPQQPP 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,426,629
Number of Sequences: 27780
Number of extensions: 142628
Number of successful extensions: 571
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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