Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I23
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.14 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.99 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   7.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 19/64 (29%), Positives = 19/64 (29%)
 Frame = +1

Query: 382 PXPXCXLPPXXPTXPXXSPXRXXWASXASPPXXXXXPXAXLSPPPXXXXXXPPSXXPXPX 561
           P P    PP  P  P  SP        A PP     P   LS  P       PS    P 
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPA 225

Query: 562 XXXP 573
              P
Sbjct: 226 GHAP 229


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 24/106 (22%), Positives = 29/106 (27%)
 Frame = +2

Query: 467 PHPXXSXFPPXXSPPPXRGNXGXXRRPPPXPXXPXXXXXYXXXPPVXXXXTSXXAPXPXP 646
           P P  S       PPP   +      P P P  P         PP+     +   P P P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSA--PALPPLGNASRTSTPPVPTP 420

Query: 647 XXXXSQXHXXCSXXPXXAXVLXXXXPPXXPLXPXXPXXXXVXLXLP 784
                      S  P     L    P   PL P  P    +   +P
Sbjct: 421 PSLPPSAPP--SLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = +1

Query: 382 PXPXCXLPPXXPTXPXXSPXRXXWASXASPPXXXXXPXAXLSPP-PXXXXXXPPSXXPXP 558
           P P    P   P+ P  +P      + A+PP     P A ++PP P      PP     P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL---PPSAPIAPPLPAGMPAAPPLPPAAP 474


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +2

Query: 491 PPXXSPPPXRGNXGXXRRPPPXPXXPXXXXXYXXXPP 601
           PP   PPP     G    PPP P        Y    P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +2

Query: 491  PPXXSPPPXRGNXGXXRRPPPXPXXPXXXXXYXXXPPVXXXXTSXXAPXPXP 646
            PP  +PP  + + G    PPP    P         PPV    T+   P P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS-AGLPPV-PVPTAKAPPVPAP 1242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,381,768
Number of Sequences: 5004
Number of extensions: 16849
Number of successful extensions: 74
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)