Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_I22
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   136   4e-33
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   133   3e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    36   0.006
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.6  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  136 bits (328), Expect = 4e-33
 Identities = 64/102 (62%), Positives = 76/102 (74%)
 Frame = -2

Query: 634 REXRXLIVLDPAQDHQPITEASYVNIPVIALCNADSPLRFVDIAIPCNTKSSHSIGLMWW 455
           RE R ++V DP  D Q I EAS+VNIPVIALC+ DS L  VDIAIP N K   SIGL+W+
Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178

Query: 454 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 329
           LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+  K
Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220



 Score = 32.7 bits (71), Expect = 0.057
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -1

Query: 716 FPRTPGATXIAGRFTPGAFXNQIQAAF 636
           F    GAT IAGRFTPG F N I   +
Sbjct: 92  FAAHTGATAIAGRFTPGNFTNYITRTY 118



 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 741 FGQRAVXKFPAHTRCYAYCGTF 676
           +G RAV KF AHT   A  G F
Sbjct: 84  YGHRAVLKFAAHTGATAIAGRF 105


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  133 bits (321), Expect = 3e-32
 Identities = 63/100 (63%), Positives = 75/100 (75%)
 Frame = -2

Query: 634 REXRXLIVLDPAQDHQPITEASYVNIPVIALCNADSPLRFVDIAIPCNTKSSHSIGLMWW 455
           RE R +IV DP  D Q I EAS+VNIPVIALC+ DS L  VD+AIP N K   SIGL W+
Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179

Query: 454 LLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 335
           LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+Q
Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219



 Score = 32.7 bits (71), Expect = 0.057
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = -1

Query: 716 FPRTPGATXIAGRFTPGAFXNQIQAAF 636
           F    GAT IAGRFTPG F N I   +
Sbjct: 93  FAAHTGATAIAGRFTPGNFTNYITRTY 119



 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 744 PFGQRAVXKFPAHTRCYAYCGTF 676
           P+G RAV KF AHT   A  G F
Sbjct: 84  PYGHRAVLKFAAHTGATAIAGRF 106


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 619 LIVLDPAQDHQPITEASYVNIPVIALCNADSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 443
           +++L+P ++     EA   ++P I + + D+  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 580 TEASYVNIPVIALCNADSPLRFVDIAIPCNTKSSHSI 470
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 472 IGLMWWLLAREVLRLRGVLPRDQRWD 395
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 417 FPVTSAGML--WLICSSTVTLKKVKRM 343
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,546
Number of Sequences: 5004
Number of extensions: 51351
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)